BAC Information

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BAC

Clone NameMSMg01-277L23
Chromosome1 (Build37)
Map Location 135,278,475 - 135,278,709
singlet/doubletsinglet
Overlap genenone
Upstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2
Downstream geneSox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277L23.T7 (MSMg01no277_l23.b1)MSMg01-277L23.TJ (MSMg01no277_l23.g1)
ACCAG415561AG415562
length720716
length of high quality
(start - end)
317 (381 - 697)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no277_l23.b1 PHD_FILE: MSMg01no277_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:56 2005CHROMAT_FILE: MSMg01no277_l23.g1 PHD_FILE: MSMg01no277_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTAATCTTCTTGCAAAGAACTCCCGGAATTGAGGGCACAAGCAAG
CTTTGTACCATGCCCAGCTGTTCACCCATGCCTTTGAGAGTTGTAGCTCC
ATTTTCTTTGCAAGCCGTAGAGTTTTGATTTGGGATTTTTTTTTATAACT
CGGTAATTTATTTTTATGTGCATGTATCGAGTTGCAGATGAACTCACCAC
ACAGGTTTTAAAGTAAAATTAATGCTTAGAGAGGTGTGAGGAAAAAGGCT
GGGACCATCACAGACATGTGGAGAACTTTCAGACACAGGCTGGAATCAGC
TCTATTTGGGCATTGATCTTCTGACCAGTACACTCTGAGTGCCCGCTGTA
CACCAAAATGTTCAAAGCCCTGGGGACCTGGCAGTGGAAAAAGAGACAAA
TATCCATGCCCTGAGCTTGTATTCTCTTTGGGGAGACAGACCAGAACAGG
ATAAATCATTAAAATACATGTTGTGTTAAACAGTAATCAATGCTAAGAAG
GAAAACACAGAGCTGAGAAGCTGTTGTGCCTGTTGGGATCAAGAGGCTGG
GAGACAGATCCACATTAGTTCTTATAGTACTTATAGAGTAACTATAAGTA
TTTATAGTACGTATAGAGTAACTATAAGTAATGTCCTAAAACTTCACAGC
TGGAGGCAGCTCGCACTTAN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCCTTTCCTCCAGTGACGATTCTG
TCACAACTATAGCTTTGATTTTCCCCTTCTAAGTGTCGGGTCATGGAGTT
TTGAAGACCATCACTAGATAAGTATGGCAGGGAGCCCTCCTGAGTGTCTG
TGTGTGAACCCTGTTGCGGGATGAGCCCAAAGCTTTCAATGGATCCAAGT
GACTCCCTCTCCCAGACGGTAAGATTCATGAGGAAGTTTTAAGACTTATT
CCTTTCAGTGAAGGGGGGAGCTGAGTCACTGTCCCTCCAGGCTGCTGCAG
TGCCTCCCTCAGTTTGGTTTCNTTCACACCCCCGCCCTAGGTCCGGTTAA
AGCCATTACTTTCAGACACTTTGCCTGACGAAAACAAATGATGCCACCAG
GGGGCAGCAGCGACTGGCTGGCGCCAGACTGGAGAATGCGGCCAGGCCAG
CCTCCCAGCAGAGAAAGGGCACGTCCTGAAATGGTCGGTCTTTATTACAC
CCATCAGAAAACAAATATGCTGGTTAAGTTATTCATCATTATCTTCTTAG
TAACAAAATAAAGCACTATCTATGTTTACAGTCATAAAAAGAAACAGTCT
GGAGAGAAATAGGGTCAACAGCGGTGGGGAGGGAAGCACCTGGCCTTGTG
GGGTTTGGGGTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_l23.g1 MSMg01no277_l23.g1 CHROMAT_FILE:
MSMg01no277_l23.g1 PHD_FILE: MSMg01no277_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:56 2005
         (235 letters)



>mm_chr1_135278275_135278909
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagtgtcgggtcatggagttttgaagaccatcactagataagtatggcagggagccc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaagtgttgggtcatggagttttgaagaccatcactagataagtatggcagggagccc 260

                                                                       
Query: 61  tcctgagtgtctgtgtgtgaaccctgttgcgggatgagcccaaagctttcaatggatcca 120
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 261 tcctgagtgtctgtgtgtgaaccctgttgcggaatgagcccacagctttcaatggatcca 320

                                                                       
Query: 121 agtgactccctctcccagacggtaagattcatgaggaagttttaagacttattcctttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgactccctctcccagacggtaagattcatgaggaagttttaagacttattcctttca 380

                                                                  
Query: 181 gtgaaggggggagctgagtcactgtccctccaggctgctgcagtgcctccctcag 235
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaaggggggagctgagccactgtccctccaggctgctgcagtgcctccctcag 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)