BAC Information

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BAC

Clone NameMSMg01-277O10
Chromosome1 (Build37)
Map Location 102,539,164 - 102,539,438
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277O10.T7 (MSMg01no277_o10.b1)MSMg01-277O10.TJ (MSMg01no277_o10.g1)
ACCAG415674AG415675
length741741
length of high quality
(start - end)
283 (437 - 719)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no277_o10.b1 PHD_FILE: MSMg01no277_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:06 2005CHROMAT_FILE: MSMg01no277_o10.g1 PHD_FILE: MSMg01no277_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAAGATCCGCGG
AATTCTACATCTTGCACAAAAAGCAAACAAAAGATGACTGGCTTACACTC
AGGTGGGAAGTCAAAAGTCAACCCCACACTGTCAAATTTCCTCCAACAAG
GCCACACCTACTCCAACAAGGCCACATCTCCTAATAGTGCCACTATCTGA
GCCAAGCATATTCAAATCACCACAATGTAAATATGTAAACAAACATGTAA
ATACACGAACACACAAATCTAAATATGTAAATATTTAAATGTGCAAATAT
TTAATGAAGATATGTCAGTCTTTTTTCTTGTGAGTGTGTAAATATTAAAA
AATGCAATCTTGNATACCTGCCAATACGNACCCCTGTATATGTGTAAATA
TGAAAATTTGCAAATAAGCAAGAATAAAGATATAAGAATGTGCAAATATG
TAAATGTGTGAATATGCAAATATGTGTGTAGGAATATGAGAATATTTCTA
TATTTGATTATGTTTATATGTATATGTGTGGATATGTAAATACGTATATA
TGTGTAAATACATATGCGTGTAAATATACATAAATATATATATATGTTTA
TATATGAGTGTATAAGTATATAGAATGTATAGACACACACACACACACAG
ACACACTAACACTCATACTCACCTAAATATGTAAATATGTATTTATCAGC
GACTTGACTACCCACAGGGATCATAAGCTATTTTTTGACCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAGAAAAATTCTCTTCCTAAGACCTTCGTCAGGTGG
CTCTCAACTGCCTGTACTTTCTCCTTCCAGGGCCTCTGACACCTCAGGCC
TTCAACAGCACCTAGCATACATTAAGCGCTCACATACATACACACACACA
TACACACACACACACACACACACACACACACACACAAAATTTAAAATAGT
AAACATAAAAATATGTTTTAATTTTAAATATATTTTAATATTTTAAATAT
TAAAAATATAATTAAAATTAAAAATATTTCTAGAAAAACTATTATGCTGA
ACAAAACCACTTCATCTTAATCCCGCCCCCCCCTTTTTTGTTTTGTTTTG
TTTTTTTAAAAAGAGTTAGTGTAAATAGACAAAAAAAANTCTAGGAGGTA
CTCATTAGGAAAATGATTAAATTTCTAAAAGGCTTCCTCGTCACACATTT
GTGAGGAAAGGATGAAGGCCCAACTTCAAACCCCCAAACAGTCATAGAAA
TATAAGGCTCGGTGCTGAATGCTTCCAGTCTCCACGCTAGGGAAGCATGT
TTAAGTGTATTCCCGCGCCTGCTGACCATGTTCCAATATTTAAACAGTTG
AAGTCCAATCAACAGTGATACCCTGTTGCGACCAAGAGCTTGGACCCGTT
GTCCTTCGACTACTGCTAACTTTTACATTTTGACTCGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_o10.g1 MSMg01no277_o10.g1 CHROMAT_FILE:
MSMg01no277_o10.g1 PHD_FILE: MSMg01no277_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:07 2005
         (293 letters)



>mm_chr1_102539130_102539822
          Length = 693

 Score =  478 bits (247), Expect = e-139
 Identities = 272/289 (94%), Gaps = 14/289 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcttcctaagaccttcgtcaggtggctctcaactgcctgtactttctccttccagg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 309 attctcttcctaagaccttcgtcaggtggctctcaactgcctgtacattctgcttccagg 250

                                                                       
Query: 61  gcctctgacacctcaggccttcaacagcacctagcatacattaagcgctcacatacatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 249 gcctctgacacctcaggccttcaacagcacctagcatacattaagcgctcacatac---- 194

                                                                       
Query: 121 acacacacatacacacacacacacacacacacacacacacacacaaaatttaaaatagta 180
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ----------acacacacacacacacacacacacacacacacacaaaatttaaaatagta 144

                                                                       
Query: 181 aacataaaaatatgttttaattttaaatatattttaatattttaaatattaaaaatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aacataaaaatatgttttaattttaaatatattttaatattttaaatattaaaaatataa 84

                                                            
Query: 241 ttaaaattaaaaatatttctagaaaaactattatgctgaacaaaaccac 289
           ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 83  ttaaaattaaaaacatttctagaaaaactattatgctgaacaaaaccac 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)