BAC Information

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BAC

Clone NameMSMg01-279I02
Chromosome1 (Build37)
Map Location 96,416,841 - 96,417,295
singlet/doubletsinglet
Overlap genenone
Upstream geneFarp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
Downstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279I02.T7 (MSMg01no279_i02.b1)MSMg01-279I02.TJ (MSMg01no279_i02.g1)
ACCAG416853AG416854
length748744
length of high quality
(start - end)		693 (46 - 738)460 (79 - 538)
definitionCHROMAT_FILE: MSMg01no279_i02.b1 PHD_FILE: MSMg01no279_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:06 2005CHROMAT_FILE: MSMg01no279_i02.g1 PHD_FILE: MSMg01no279_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACTCAATTTTTTAATAGGGTTATTTGGTTT
TCTGGAGTCCAACTTCTTGAGTTCTTTTTATATATTGAATAGAAGCCCCC
TATCAGATTTAGGATTGGTAAAGATCTTTTTTCCAATTGGTTGGTTGACG
TTTTGTCTAATTTACAGTGTCCTTTGCTTTACAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATCGATTCTCGATCTTATTGCACAAGCCATTGCTGTT
CTATTCAGGAACTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGC
ATTCTTCTACGTGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAGT
GCTGTCTTTTTTCCACTGGATGGTTTTAGATCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGAGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGG
TCTACTTGTCTGTTGCTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGAGTTTTGCTATCCTAGGTTTTTTGGTATTCCAGAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCAGCCTGGTCTACAAAGTGA
GTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTTTCTCGAAAAACAAA
ACAAAACAAAACAAAACAAACGAACAAACAAACAAAAACAATAAATAAAT
AAAATAAAAAAATAAAAAAAGAAGAGAAATGTTGAAGTTAAGCAACACCA
TTAACCCAACTAATGTATCTATCACATGGAAAGACAGCTTCACCCAAATG
CAAAGAACATATCTTCTCATGGATCCTCTTTATTTTTTAGCCTTATTTGT
CCTTATCCTGTATATTATAGTCTTCAATTTTCTGTTGTTATGATTTTCTG
TGTTTCCCACAATTTATTTTATTTTAACTTGACCTTTTTGTTTTGCTTTT
ATTTGCCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNANNNNNN
NNNNNNNNNNNNNNNAANNNNNNNNNNNNNNNNNNNNNNGNNNNNANNNN
NNNNNNNNNNNNNNGAGGNGAGGAGGAAAGAAGAAGAGAAAAAAAAAAAA
AGGGAAGAAAAGAAAGAAGNAGGNAGGAAAGGAGGAAAAAAGGAAGGGAG
AGAAGAGGAGAGAGGGAGAAAGAAAGAGAAAAGTGAAAGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_i02.g1 MSMg01no279_i02.g1 CHROMAT_FILE:
MSMg01no279_i02.g1 PHD_FILE: MSMg01no279_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:06 2005
         (460 letters)



>mm_chr1_96416636_96417495
          Length = 860

 Score =  828 bits (428), Expect = 0.0
 Identities = 450/460 (97%), Gaps = 5/460 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctttc 265

                                                                       
Query: 61  tcgaaaaacaaaacaaaacaaaacaaaacaaacgaacaaacaaacaaaaacaataaataa 120
           ||||     |||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 266 tcga-----aaaacaaaacaaaacaaagcaaatgaacaaacaaacaaaaacaataaataa 320

                                                                       
Query: 121 ataaaataaaaaaataaaaaaagaagagaaatgttgaagttaagcaacaccattaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaataaaaaaataaaaaaagaagagaaatgttgaagttaagcaacaccattaaccca 380

                                                                       
Query: 181 actaatgtatctatcacatggaaagacagcttcacccaaatgcaaagaacatatcttctc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaacgtatctatcacatggaaagacagcttcacccaaatgcaaagaacatatcttctc 440

                                                                       
Query: 241 atggatcctctttattttttagccttatttgtccttatcctgtatattatagtcttcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggatcctctttattttttagccttatttgtccttatcctgtatattatagtcttcaat 500

                                                                       
Query: 301 tttctgttgttatgattttctgtgtttcccacaatttattttattttaacttgacctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgttgttatgattttctgtgtttcccacaatttattttattttaacttgacctttt 560

                                                                       
Query: 361 tgttttgcttttatttgcctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgt 420
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 561 tgttttgcttttatttgcctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt 620

                                                   
Query: 421 gtgtgtgtgtgtgagagagagagagagagagagagagaga 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtgtgtgtgtgagagagagagagagagagagagagaga 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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