BAC Information

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BAC

Clone NameMSMg01-279L02
Chromosome1 (Build37)
Map Location 114,894,371 - 114,894,693
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L02.T7 (MSMg01no279_l02.b1)MSMg01-279L02.TJ (MSMg01no279_l02.g1)
ACCAG416984AG416985
length750927
length of high quality
(start - end)		327 (45 - 371)---
definitionCHROMAT_FILE: MSMg01no279_l02.b1 PHD_FILE: MSMg01no279_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:21 2005CHROMAT_FILE: MSMg01no279_l02.g1 PHD_FILE: MSMg01no279_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCACTATAGCATAGCCTTACTATGTCAAGTCAGTTGTCCCTAG
TATTATTACAGTACGATATTGTGTGATCAGCCTGCCATATAGCGGCATCA
TAATTTATGTTGTGAACAAATGTCCCATTATTTCATTATGTACACCACTG
TGCCATCACAGGTCCCTATTATATGACTATAGATATTTTGTTTATTTTTT
TCCTCAACGGTGTCTTTGTAACATCACAGAGGACTATGGTGATTCACTGT
ACTATACCATGTTGTAAAGGCTCTATTTTGCCATCTGCATCCTGTTGTGT
TGTCACAGTGACTTATCCATCAGTGTGTCTTACTTTAAAATCACTATGCC
ACATTGTAACATCACTCTGCCCAATGATGTCATCATTATGCCCTAGTATG
TCATCCATGTGTCTGATTATGTCACCCATATATCCTAGTGAGGCTTCCAA
GGCACTATTGTGTCACAATATTTTGATGTGCCATTACTGTCTCAGGTTGT
GTTATCATAGTTCAGTCCTGTACCATTATTATGGACAGTGAATTTCACAA
GTCCTACTGTGGCATCGCAATGTCCTAAGGGGCCAATTACTTTTGAGGAT
TGGACCTTCCCTGGTTTCAATTGTGGCCAACCATTTTCCCTTAAAGGGGC
CCCCTTGGACCCCAATTGTGGAATTAAATTAAGGGACCCTGGTACCCTTC


CGTCCCCGCCTCATTGGCGGGCGCCCTCGTCACCCGCCCCTCACACCCCC
GCGCCGCTACCACCCACCACACACACCGACCCCCACACCCAAAAAAATAA
AATAAAAAAACAAAACAACACAACAAAAACACTCAACACACCCACCGCAA
AATCCCTCCCCCGCTCTTCCAATAAGCATTGGCGGCTCCCTCAACCCCCG
CGCAGCCGCGGTGGAAATGAAGCGACATAGTCTCAGGCACTCAAAGTTAC
GCGCGGGGCGGTGGGGGTGGAGGCGGTAAATGAGTCGCGTAGAGCCAGGG
TGTGTGTACAACGAGGGATCCCGCGGAGTGAGCCGGCGCGCGCCCGTTTG
GGGTCGTGTGTGCGCCGCCGTGTTGGCCGCGCTCCTGCTTTGTCGTCGTC
CTGTCCTGCGCCCGGCTCAGAAGTTGCCTCTTTCTGGTGATCGTTGTGAG
TTTGTGGTGTGTGCCGCCGCCCGCTCCCCCCTCTCCCACTATTCTATCCN
TCNNNNNNNNCCGGCAGCAGGCTGTAGGTGGGGCCCTTTCCATGGTCTAT
TTTCATCACTCTTCATTTTATTCACTCGTTTCATGCAATGGCTGGTGTAC
TTGTCTATATACTTTCTTCTCTTTTTNCNNNNCCCCCCANNNNNNNNNNN
NCTGGGTCTTAAACTGNNTGGANTNAGCNNCNTAGACNCGTTNCGAACAA
TGANNNCGNCTNGCCNTANNTAGANNNTGTTNNNACNNNNTNGNAGGNGA
NGNTNANTTNNCCGGNNTCNANNATANNGCAGGTGTNNGGANNNNNNNAT
NTTCTGTCNANNTNGTTCTCCGGGGAGNNGCGGTTACTTNNTGCTGNNNN
AAANGNTGGCNGCCGNNNNCACCNTGGGCGGTNNNNANNTNTGACTNGNA
CCGGNNNNGNNAGNTCGTCTGCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l02.b1 MSMg01no279_l02.b1 CHROMAT_FILE:
MSMg01no279_l02.b1 PHD_FILE: MSMg01no279_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:21 2005
         (327 letters)



>mm_chr1_114894167_114894893
          Length = 727

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgcactatagcatagccttactatgtcaagtcagttgtccctagtattatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattctttgcactatagcatagccttactatgtcaagtcagttgtccctagtattatta 468

                                                                       
Query: 65  cagtacgatattgtgtgatcagcctgccatatagcggcatcataatttatgttgtgaaca 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 467 cagtacgatattgtgtgatcagcctgccaaatagcggcatcataatttatgttgtgaaca 408

                                                                       
Query: 125 aatgtcccattatttcattatgtacaccactgtgccatcacaggtccctattatatgact 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 407 aatgtcccattatttcattatgtacacaactgtgccatcacaggtccctattatatgact 348

                                                                       
Query: 185 atagatattttgtttatttttttcctcaacggtgtctttgtaacatcacagaggactatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atagatattttgtttatttttttcctcaacggtgtctttgtaacatcacagaggactatg 288

                                                                       
Query: 245 gtgattcactgtactataccatgttgtaaaggctctattttgccatctgcatcctgttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtgattcactgtactataccatgttgtaaaggctctattttgccatctgcatcctgttgt 228

                                  
Query: 305 gttgtcacagtgacttatccatc 327
           |||||||||||||||||||||||
Sbjct: 227 gttgtcacagtgacttatccatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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