BAC Information

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BAC

Clone NameMSMg01-280A04
Chromosome1 (Build37)
Map Location 95,275,017 - 95,275,320
singlet/doubletsinglet
Overlap geneTmem16g
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7
Downstream geneHdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280A04.T7 (MSMg01no280_a04.b1)MSMg01-280A04.TJ (MSMg01no280_a04.g1)
ACCAG417212AG417213
length812732
length of high quality
(start - end)
49 (73 - 121)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no280_a04.b1 PHD_FILE: MSMg01no280_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:45 2005CHROMAT_FILE: MSMg01no280_a04.g1 PHD_FILE: MSMg01no280_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGG
AATTCTCACTTCATTACCAAGGATGAAAAACCAACAGCAAACAATATACT
TTTTTGGTTTTTCAAGACAGTATTTTCTTGTATAGCTCTGGATGTCCTGG
AACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAATCTGCCTGCCT
CTGCTTCCCAAATGCTGGGATTAAAGGCATGCACCACCATTGCTCCGCTC
AAACAATATAATTAATAATGAATTTGCAAGAGTACGGCTTTAACATTAAC
ATGATTATATCTTCTCTCAACATGTGTTTTTATTCCCTTATTGTAACTTC
ATAACCCGGCAAATATTTTTTTTTTCCCCCCCCCCCCCCCCCTTATTAAA
TAATTGAATTTGTTTAACCCCACATCCCCCTCTATAAAAAAAAAAAAAAC
AAAGGTTGGCGGGCGGGGCCCCCCTTTATTTTATCTTCTCCCTCCGTCTT
ATCCCCTTTTATTCCCCCATCCAATTTTTATCTCCCCTTTTTTTTATTTA
TATCCCCCCTATTTTTCTCCCATTTCCTCTCCCCCTTTTCCCTTTCCCCC
CTTTTTCCCCCCCTTTTTTCCCCACCCTTATTTTTATCCACTCCTATCCC
CTCCGCCTTTATTTTTCCCTACCACCCTTTTTTTTACCCATTTTCCGCCT
TATTACTCCTCCCATTTTTACTCATCATTTTCTTCCCCTTTTTTTCCCCC
TCTTTTAACCCCCATTTTATCTACTTTTTTCCACCTTATTTTTTTTCTTA
TACCCACCCTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAAAGGAATACTTCCTCCAAA
CTACTCCGGAAAATAAGTACTAATCTCCCCAGGCCTATTAGAGATAAGCA
AAACTTAGAATACTTCGAGTAAATATTTACTCTCCTGGACTGAACAGCCT
TTAGACCCTGAGTCCCACATCAAAGATACACCTCTAGGGAGGCAGTGTAG
GGTCACAGCCGTGATGAAGTTCCAGTCTGCCATTAAGTCCCCTATAAATG
TTAGGTGGACAAGATGACCCTGAGTAGTAACAACTATTCAAAAGAGAATA
GCTCTGGTGTAGTTAAAGTTATTCTGGCCACTCGCCCTCTGTGGTTTAAA
TCTCCTATCTGCCAGAGAAGTCACACTTACAGTCACACTTATAGTCAAGC
TTACAGTCACACTTACAGTTGGAAACAGGTATAAGGATCAGTGTGTGGAA
AGCCTGAGGTGTATATAAATTTCTGAGGTATCTGAGGAAGTCTTCTGTCG
GGGGCTGACTCTTACTTTGGTATTAGCCTCAGTCAGTCAGGTGCCTCAGC
TGTCCTTCATCTCTGAGTGAGTCTAGACTGCTCACTGACGAGGCATAGCA
CATAGTATCACTATTACATTAGCTCACGATCCCACTATGGATCGGGGTTG
CATTGCACTTCCCTTTTTTTCTTTTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_a04.g1 MSMg01no280_a04.g1 CHROMAT_FILE:
MSMg01no280_a04.g1 PHD_FILE: MSMg01no280_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:45 2005
         (291 letters)



>mm_chr1_95274830_95275520
          Length = 691

 Score =  470 bits (243), Expect = e-137
 Identities = 284/305 (93%), Gaps = 15/305 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaaaggaatacttcctccaaactactccggaaaataagtactaatctccccaggcct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||
Sbjct: 188 agctaaaggaatacttcctccaaactactctggaaaataagtactaatctaaccaggcct 247

                                                                       
Query: 61  att--------ag-----agataagcaaaacttagaatact-tcgagtaaatatttactc 106
           |||        ||     ||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 248 attggttaataagcaaaaagataagcaaaacttagaatactgt-gagtaaatatttactc 306

                                                                       
Query: 107 tcctggactgaacagcctttagaccctgagtcccacatcaaagatacacctctagggagg 166
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcctagactgaacagcctttagaccctgagtcccacatcaaagatacacctctagggagg 366

                                                                       
Query: 167 cagtgtagggtcacagccgtgatgaagttccagtctgccattaagtcccctataaatgtt 226
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagtatagggtcacagccgtgatgaagttccagtctgccattaagtcccctataaatgtt 426

                                                                       
Query: 227 aggtggacaagatgaccctgagtagtaacaactattcaaaagagaatagctctggtgtag 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 aggtggacaagatgaccctgagtagtaacaactattcaaaagagaatagctctagtgtag 486

                
Query: 287 ttaaa 291
           |||||
Sbjct: 487 ttaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)