BAC Information

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BAC

Clone NameMSMg01-280A16
Chromosome1 (Build37)
Map Location 190,893,436 - 191,034,859
singlet/doubletdoublet
Overlap geneKcnk2
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneLOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280A16.T7 (MSMg01no280_a16.b1)MSMg01-280A16.TJ (MSMg01no280_a16.g1)
ACCAG417236AG417237
length756764
length of high quality
(start - end)
150 (132 - 281)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no280_a16.b1 PHD_FILE: MSMg01no280_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:47 2005CHROMAT_FILE: MSMg01no280_a16.g1 PHD_FILE: MSMg01no280_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,893,436 - 190,893,583)(191,034,575 - 191,034,859)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCGAGGGGGGCGG
AATTCCAACTTATTACGAAAAAGAGTATCTTGGCCTAGAGGCAATATTAG
ACTCGCCTTTGTAATCATTTTGACCATTAGATACAAGGAAGAACTCTAGA
ATCACAGGGAAGGTTTTTTTTTTTTGTATTTGTTTAGCCTTTTGAAATAA
GAAATACTTAAATATAATCCAAGTGAAGGAAATACATCATAGAGAAGCAA
AGAATATGGTTATAAAAAGTCAGGTCATAAGAAGAAGTCAGGGGGAAAGG
GTCTCACACAGGGGGATTCCCAACTTGTGGTGNNGTGACNANCAGAAAAG
CGGGCGGGNTGGNGAGTTTTTTGTATTTTCGCACCCCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNGAAAAAAAAAAAAAAAA
AAAANGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNGNNNGNGN
NNGCGGGGNNGGGGGGNGGGGGGGNNNGNGGGGGGGGGGGGGGGGGGGGG
GNGGGGGGNGCCGCGTCGGGCCCCCNCNCGGCGCGGGGGGGCCCGCCGNN
GNGGGCGCGGCGGGCCCGGCGCCNGGGGGGCGCGGGGCGCCNGGGGNGCG
CGGGGGCCGCCGCGGCCGGGGCGGGGGCCCGCCNCGCCGCCCCCNCTTTT
TTTTTTTTTTTTTTCGAGGAACACGTTTTCACAATTGTTTTTTTTTTCCT
GCTTTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTGGCAACACTTCTCAGCTCT
GAACTCTGGGTTGCATCTCAAGCTAACAGCAGCACACCTACCAAGTCCCA
CCCAGGTCACCTAGGCTAACACCTCATTCTCTTCCTCATTCCTGTTGCCT
CTACAATGGCCCTTTCTAAGTCTAAGTCCTTGAAGCTACAGGAAGATGAA
AGCAATAGGTGACACCTGGAAGATTAAAGGGGAGACATTAACAGATTTCC
ATTTTATAGCATTTGAAATGTCTTTATGTCTGCGTGCGTGCGCGTGCCTG
CGTGCCTGCGTGTCTTTGTTGTGGCCGCGCCGCCCGCGTGCGTGCGTGCG
TGCGTACGTGCGTGCGTGCGTGCGTGTGTGCGTAGAAGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTGTGTCTTTGCACTGTGTGG
AGGGCATAGGTCAACCTCACATGCCTCCCAGGCGGCGTCTACTTTTAACT
AATTAGTTGATTGGTTAATTAATTAACGATACAGGGTCTCTCACTGGCCC
CGAGCTCTCACCTAGGTTATGCTGACTGGCCACGACATCTATCAAATCTT
CTGCCTCAACCTCCACATCTCTGGCACTATCACTCTTGAAATTCCCTACT
TGCCCTGATGACTTGGCACTCGACATTTCCTTCACTCCCCTTTCTGTTCC
AATATAAATTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_a16.b1 MSMg01no280_a16.b1 CHROMAT_FILE:
MSMg01no280_a16.b1 PHD_FILE: MSMg01no280_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:47 2005
         (150 letters)



>mm_chr1_190893236_190893785
          Length = 550

 Score =  271 bits (140), Expect = 2e-77
 Identities = 146/148 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaaggaagaactctagaatcacagggaaggttttttttttttgtatttgtttagcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaaggaagaactctagaatcacagggaaggttttttttttttgtatttgtttagcctt 260

                                                                       
Query: 61  ttgaaataagaaatacttaaatataatccaagtgaaggaaatacatcatagagaagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaataagaaatacttaaatataatccaagtgaaggaaatacatcatagagaagcaaa 320

                                       
Query: 121 gaatatggttataaaaagtcaggtcata 148
           ||||| ||||||||||||||||| ||||
Sbjct: 321 gaataaggttataaaaagtcaggccata 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_a16.g1 MSMg01no280_a16.g1 CHROMAT_FILE:
MSMg01no280_a16.g1 PHD_FILE: MSMg01no280_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:48 2005
         (289 letters)



>mm_chr1_191034375_191035063
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagtggcaacacttctcagctctgaactctgggttgcatctcaagctaacagcagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctaagtggcaacacttctcagctctgaactctgggttgcatctcaagctaacagcagcac 426

                                                                       
Query: 61  acctaccaagtcccacccaggtcacctaggctaacacctcattctcttcctcattcctgt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 425 acctaccaagtcccacccaggtcacctcggctaacacctcattctcttcctcattcctgt 366

                                                                       
Query: 121 tgcctctacaatggccctttctaagtctaagtccttgaagctacaggaagatgaaagcaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 tgcctctacaatggccctttctaagtctgagtccttgaagctacaggaagatgaaagcaa 306

                                                                       
Query: 181 taggtgacacctggaagattaaaggggagacattaacagatttccattttatagcatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taggtgacacctggaagattaaaggggagacattaacagatttccattttatagcatttg 246

                                                        
Query: 241 aaatgtctttatgtctgcgtgcgtgcgcgtgcctgcgtgcctgcg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaatgtctttatgtctgcgtgcgtgcgcgtgcctgcgtgcctgcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)