Query= MSMg01no280_b15.b1 MSMg01no280_b15.b1 CHROMAT_FILE:
MSMg01no280_b15.b1 PHD_FILE: MSMg01no280_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:52 2005
(702 letters)
>mm_chr1_71587133_71588234
Length = 1102
Score = 1311 bits (678), Expect = 0.0
Identities = 693/698 (99%)
Strand = Plus / Plus
Query: 5 gaattcacagtcatctacttcaaatggatctgagtactgtctggcactctttctccagat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagtcatcaacttcaaatggatctgagtactgtctggcactctttctccagat 264
Query: 65 tggcttctgctgatgccactttctaccaaaacgccctagccagtgtcaccagtgatttcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggcttctgctgatgccactttctaccaaaacgccctagccagtgtcaccagtgatttcg 324
Query: 125 atgacaacgttgctcattccaagtcacccttcagttttcaaatgacttcaccaaaatgtt 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 atgacaacgttgctcattccaagtcgcccttcagttttcaaatgacttcaccaaaatgtt 384
Query: 185 aaaaatgatcgattgcactttcacacccaattattactggctttcacaatacccagctac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaatgatcgattgcactttcacacccaattattactggctttcacaatacccagctac 444
Query: 245 tttctcctggagctttgccttaaaccttcttctcactctgcagctcctcttgcctaatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctcctggagctttgccttaaaccttcttctcactctgcagctcctcttgcctaatca 504
Query: 305 ttacaatctgagagagttcactgtcacttatgtgttgaaaggataaatttacaactccaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacaatctgagagagttcactgtcacttatgtgttgaaaggataaatttacaactccaa 564
Query: 365 gaagatttacggaccctttttgagacaaagtctcattctgtagcctacctaggttggctt 424
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gaagatttagggaccctttttgagacagagtctcattctgtagcctacctaggttggctt 624
Query: 425 atatatcccaaggactgagattgtagttgtgagcttccaagttcagacccagaacagctt 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatatcccaatgactgagattgtagttgtgagcttccaagttcagacccagaacagctt 684
Query: 485 ttctagatgtgtccactgccttagttagggttctgctgctgtagacagacaccatgacca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctagatgtgtccactgccttagttagggttctgctgctgtagacagacaccatgacca 744
Query: 545 aagcaactcttatgaggacagcacttaattggggctggtttacaggttcaggggttcagt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagcaactcttatgaggacagcacttaattggggctggtttacaggttcaggggttcagt 804
Query: 605 ccaatatcaccaaggaaggaacatggcggcatccaggcaggcatggttcaggaggagctc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccaatatcaccaaggaaggaacatggcggcatccaggcaggcatggttcaggaggagctc 864
Query: 665 agagttctacatctttatctgaaggctactagcagaag 702
||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agagttctacatctttatctgaaggctactagcagaag 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_b15.g1 MSMg01no280_b15.g1 CHROMAT_FILE:
MSMg01no280_b15.g1 PHD_FILE: MSMg01no280_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:52 2005
(639 letters)
>mm_chr1_71752786_71753820
Length = 1035
Score = 1139 bits (589), Expect = 0.0
Identities = 626/645 (97%), Gaps = 16/645 (2%)
Strand = Plus / Minus
Query: 1 gattgtctcgtccctgattaagagatgacttattggatgaaaaaaagaagctctgtcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gattgtctcgtccctgattaagagatgacttattggatgaaaaaaagaagctctgtcgag 729
Query: 61 gaaagagagggtcagtcattgattctagcacccaatcaaggtgtcctaaaaacaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaaagagagggtcagtcattgattctagcacccaatcaaggtgtcctaaaaacaaaataa 669
Query: 121 ggaaaagcagaaccactttgggtttataaataaaattctacataactttcagccacagca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 ggaaaagcagaaccactttgggtttataaataaaattctacgtaactttcagccacagca 609
Query: 181 aagtttgtgatatgttttaaattgacaattttatgatgactaaaaaaaggagaaat---- 236
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 608 aagtttgtgatatgttttaaattgacaa---tatgatgaataaaaaaaggagaaatcgac 552
Query: 237 --tggttttgtttatttcccgctaggggaggggggtcctgaaaacatgttgttttaaagg 294
|| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catg--tttattt-ttt---gctaggggaggggggtcctgaaaacatgttgttttaaagg 498
Query: 295 agacagaaagaatattgttgacaggaacccagggggtcggtttctatggaggttattctg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agacagaaagaatattgttgacaggaacccagggggtcggtttctatggaggttattctg 438
Query: 355 ttcggttttggcattgtagagtttgtactttttaacttcccccaggagctgaattataat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttcggttttggcattgtagagtttgtactttttaacttcccccaggagctgaattataat 378
Query: 415 gattattgcttgaactaagtagatttgaggcaagtcacttggaaaagggtcataaaaatg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gattattgcttgaactaagtagatttgaggcaagtcacttggaaaagggtcataaaaatg 318
Query: 475 acttgactatggccatgtttataattagaaactgtggattgaagtgtttgaaaaataatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acttgactatggccatgtttataattagaaactgtggattgaagtgtttgaaaaataatg 258
Query: 535 gaaaaaaaaaacctactttcagcaaagccaaaattgttagtagatcaagataattttctg 594
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 g-aaaaaaaaacctactttcagcaaagccaaaattgttagtagatcaagataattttctg 199
Query: 595 ttgtggatagccctggtgttgcttgtattttgatgctaatttcgt 639
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgtggatagccctggtgttgcttgtattttgatgctaatttcgt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1035
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1025
Effective search space: 644725
Effective search space used: 644725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
