BAC Information

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BAC

Clone NameMSMg01-280D02
Chromosome1 (Build37)
Map Location 153,002,302 - 153,002,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040
Downstream geneLOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D02.T7 (MSMg01no280_d02.b1)MSMg01-280D02.TJ (MSMg01no280_d02.g1)
ACCAG417348AG417349
length754755
length of high quality
(start - end)
239 (122 - 360)545 (75 - 619)
definitionCHROMAT_FILE: MSMg01no280_d02.b1 PHD_FILE: MSMg01no280_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005CHROMAT_FILE: MSMg01no280_d02.g1 PHD_FILE: MSMg01no280_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
ACATGCGCTGCCACACCTGGCTAAGAAGGTCGATTTTAAATCATGTATAA
ATTAATAGTCCTCATTGGACCCCCAGCAGCAGCATTGCCTGGGAATTGGT
TAATAATTCAGAATCTTAGACTTTACACTAGATTTTCCAAACGAGAAACT
CAGCAGGAGGCCCAGCAAGTCATGTTTTATAGAATCTCGAGATGATTCTG
ATAGATGCTAAATTAGAGGACCACATCTTAATCTCTGGAACCTAGAAATA
CTTTTTTTTTTAAAGATAAAAATAAATAAATAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAATTGTTCTCTGCCCACCGCACTTAAAGTCGAGACAGTAGT
AGTGACCCTTGTCACCTGGGTGAGTCTTAACTGTCATCACATGCATCCTA
ATAAGGTGTAGAGGGAGCTACTATGTTGAAGATGAAGAAGCATTGTTACC
GTGGTGGCAGAGCCTGGGGTGATGCAGTCATGAGCTAAATAAAGTCAGCA
GCCACCGAAGGTGACAGGGACCAGAAGGGAAGCAGATGCAGTTCTGAGCA
CCTTGGTTTCAGCCCAGTGAAAGTAACTACAAGGGCATGGAGAGACAGCT
CAGCACTTTCTGCTCTCTCTCTCGCTCTCTCATTCTCTCTCTCTCTCTTC
CTCTCTCTCTTTCTCCCTCTCTCCTCTCTCTCATCCCAGTATCTATATCA
GGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGATTGCTAAAAAAACTGAGGAGCACAGATAGCTTTCAGT
AAAGTTAAGTTTTAAATTTGTTTACCCAATCAAAGTCCATTCTAGAGAAA
GATTGAGAGAGAGCGTAAGCTCAGATAGCAGCACACCGAGATCCCTTTCT
GGAGTCTTAAGTTTCAGTGAATACTTTTGAGACCAGTGGCATGTTCATAG
GATAAGTGACCGCTTTCTCCCTCCCCAAATCATGAAGAACTGGGGTCTCC
CTTTAGGGGATTTCTGAATCTCTTGAAAGTCAAGGGTAGGGCAGGCAAGA
CCTTACAGGTGATCATATAAGTAAGCTTGACTCTTCTGAGGATTCTGACT
TTTCTTTCCTCTTTGATTTCTTTTTGTCTTCCTATTTTTTCCTTTTATTA
AAAATAGATATTTCAAAAACTAACACATTGGAACAGAACAGAACAAACAA
ACAGAAGAAAAAAGGCCCAAGAGAATGCACAAAAATAGAGACTCACTTAT
TTGAACACTCAGGAACCCCATGAAAACACATCAACATAATATATATGGAC
ATCATAATATATATACTCCAAGATAAAAAGAGAGAGGAAGAAAAACATAT
AAGTAAAATAATGATAAAATTAAAAGAGAAAAAGGTCTAACATTACGTTA
TGAGGGCAGGGAACATCCAAAGATGACTTTGAGGTCCTTTTCTGTTGCCC
ACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d02.g1 MSMg01no280_d02.g1 CHROMAT_FILE:
MSMg01no280_d02.g1 PHD_FILE: MSMg01no280_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:59 2005
         (545 letters)



>mm_chr1_153002102_153003045
          Length = 944

 Score =  779 bits (403), Expect = 0.0
 Identities = 492/543 (90%), Gaps = 36/543 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaggagcacagatagctttcagtaaagttaagttttaaatttgtttacccaatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 actgaggagcacagatagctttcagtaaagttaagttttaaatttgtttagtaaatcaaa 260

                                                                       
Query: 61  gtccattctagagaaagattgagagagagcgtaagctcagatagcagcacaccgagatcc 120
           ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gtccactccagagaaagattgagagagagcgtaagctcagatagcagcacacagagatcc 320

                                                                       
Query: 121 ctttctggagtcttaagtttcagtgaatacttttgagaccagtggcatgttcataggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ctttctggagtcttaagtttcagtgaatacttttgagaccagtggcatgttcataggatc 380

                                                                       
Query: 181 agtgaccgctttctccctccccaaatcatgaagaactggggtctccctttaggggatttc 240
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 381 agtgaccgctttctccctccccaaatcataaagaactggggtctctctttaggggatttc 440

                                                                       
Query: 241 tgaatctcttgaaagtcaagggtagg-gcaggcaagaccttacaggtgatcatataagta 299
           ||||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 441 tgaatctcttgaaagccaagggtaggag-aggcaagaccttacaggcgatcatataagta 499

                                                                       
Query: 300 agcttgactcttctgaggattctgacttttctttcctctttgatttctttttgtcttcct 359
           |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 agctcgactcttctgag-attccgacttttctttcctctttgatttctttttgtcttcct 558

                                                                       
Query: 360 attttttccttttattaaaaatagatatttcaaaaactaacacattggaacagaacagaa 419
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 559 attttttccttttattaaaaatagatatttcaaaaacgaacacatcggaacagaacagaa 618

                                                                       
Query: 420 caaacaaacagaagaaaaaaggcccaagagaatgcacaaaaatagagactcacttatttg 479
           |||||||||||||||                                 ||||||||||||
Sbjct: 619 caaacaaacagaaga---------------------------------ctcacttatttg 645

                                                                       
Query: 480 aacactcaggaaccccatgaaaacacatcaacataatatatatggacatcataatatata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aacactcaggaaccccatgaaaacacatcaacataatatatatggacatcataatatata 705

              
Query: 540 tac 542
           |||
Sbjct: 706 tac 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space:   499690
Effective search space used:   499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)