BAC Information

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BAC

Clone NameMSMg01-280D09
Chromosome1 (Build37)
Map Location 133,246,056 - 133,409,073
singlet/doubletdoublet
Overlap geneSrgap2, LOC100042826, LOC100042821
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D09.T7 (MSMg01no280_d09.b1)MSMg01-280D09.TJ (MSMg01no280_d09.g1)
ACCAG417361AG417362
length782774
length of high quality
(start - end)		322 (47 - 368)698 (77 - 774)
definitionCHROMAT_FILE: MSMg01no280_d09.b1 PHD_FILE: MSMg01no280_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:00 2005CHROMAT_FILE: MSMg01no280_d09.g1 PHD_FILE: MSMg01no280_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,408,771 - 133,409,073)(133,246,056 - 133,246,753)
sequence
CATATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTA
CTTCCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTTCCTTCCTTCGTTTTT
CAAGTCAGAGTTTCTCTATGTAGCCCTGGCTGTCCTGGAACACTCTCTGT
AGACTAGGCTGGCTTCTGGGGTTAAAGGCAAGGGTCCAGAAATGCCAGTT
TTTCTGGATTCAGCAGCAGAAGAATCAATCATTATCCTGGCAGAAACAGA
AACTGCCTAGGTTTTTAACCTTTGTGCCTCATTTCTCTCTTCTTTTGGTC
TTAAAAGAAAAAGAACATGATATATACACCTCAACACATACATGCATCTT
ACTCTTTCATTCAAGACTTGCCCCCCACTGATTTAATGCTTACGAGAGCA
GGAATTACTTGGAATGGATACTGTGATCTGTGGGCTTAGTAGGCATGATG
TGAAAGCAGGCCTGTTTGGCCTGTGAAGATTGCTTATAACAGAGATATGT
TATTGAGTAAGAATTTGATAAATTATCCGATAATATTACGAGCAGGTATA
TATCTGCTTGTGCCTTTTTATGCTTAAACTATTTTGAGTATGGAGCGATG
AGTTCACATTTGTTTTCAGGTCTGTGTTTAACCCTCTCTCTAATCCTCCT
TCTCTATATTGTTTGCCCCGACACTTACGTGTGGTCGCTCTCTTATTGTT
TTTCAGTGGCTTATTAAACTCCTCTTTGTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTTCATAGGGGGGCAAAAAAC
ATTGTTGTACATCTCCATGAGCCGTTGCTTGTCACTGGTGGCATCTAGGT
TTTCTACTGCATTTTCAATAGCATCCAGACCTTCATGTTTTGACTGTTCC
AGATTTAATTCAGCAGATAGGAAAGTGCGTAGAGCCCGGTTCAGGCTAGC
ATGGTAGCCTAGGTCACAACATTGCTGTGGGAAGGAGAAGGCACATAAGC
ACACCACAGACATCTCAAGGTCTGACAAGAAGGGAAGTGGTCTTGGGGTA
GATCTGACCATATCAAGGTGACTGACTGTAACAGGAAGGAAGCTGAGATT
ACAATGTCAAAACCTGGGTAAGATTCCTTAGTTCTTGCTCCCTAGTTCAC
TGGTTAGTACACCATGCAGGGCACTAAGGTGGTTAGACAGAAGAAGATTC
ATAAAAAACAATGATAAGAGTTAACCAAGTGATGTTTCATAAAAATGAGA
ATGTCCACAAGTTAGAGAATTCCGTTCTGTTTTCTGGTTTGTCTGGGGAA
TGCCATAACAACAAAATTCAACAATAATAATAATACTGCCTGCTATGATT
CTCTGAGGGTTCCTGTGGTTAGAAGTCACTACATAGCAAGCTTTCCAGGC
CAATGGAACAGCCAGGAGTCAAAAATCTGGAGTGCTGTACCAGCAGTAAA
TTCACATATACTCAACTCTAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d09.b1 MSMg01no280_d09.b1 CHROMAT_FILE:
MSMg01no280_d09.b1 PHD_FILE: MSMg01no280_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:00 2005
         (322 letters)



>mm_chr1_133408401_133409122
          Length = 722

 Score =  532 bits (275), Expect = e-155
 Identities = 296/303 (97%)
 Strand = Plus / Minus

                                                                       
Query: 20  ttccttccttccttccttccttccttccttccttacttccttccttccttccttccttcc 79
           ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 673 ttcctcccttctttccttccttccttccttccttccttccttccttccttccttccttcc 614

                                                                       
Query: 80  tcccttccttccttccttcgtttttcaagtcagagtttctctatgtagccctggctgtcc 139
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttccttccttccttcctttgtttttcaagtcagagtttctctatgtagccctggctgtcc 554

                                                                       
Query: 140 tggaacactctctgtagactaggctggcttctggggttaaaggcaagggtccagaaatgc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tggaacactctctgtagactaggctggcttctggggttaaaggcaagggtccagaaatgc 494

                                                                       
Query: 200 cagtttttctggattcagcagcagaagaatcaatcattatcctggcagaaacagaaactg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagtttttctggattcagcagcagaagaatcaatcattatcctggcagaaacagaaactg 434

                                                                       
Query: 260 cctaggtttttaacctttgtgcctcatttctctcttcttttggtcttaaaagaaaaagaa 319
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 433 cctaggtttttaacctttgtgccccatttctcttttcttttggtcttaaaagaaaaagaa 374

              
Query: 320 cat 322
           |||
Sbjct: 373 cat 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_d09.g1 MSMg01no280_d09.g1 CHROMAT_FILE:
MSMg01no280_d09.g1 PHD_FILE: MSMg01no280_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:00 2005
         (698 letters)



>mm_chr1_133245856_133246953
          Length = 1098

 Score = 1319 bits (682), Expect = 0.0
 Identities = 694/698 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttcataggggggcaaaaaacattgttgtacatctccatgagccgttgcttgtcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttcataggggggcaaaaaacattgttgtacatctccatgagccgttgcttgtcact 260

                                                                       
Query: 61  ggtggcatctaggttttctactgcattttcaatagcatccagaccttcatgttttgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggcatctaggttttctactgcattttcaatagcatccagaccttcatgttttgactg 320

                                                                       
Query: 121 ttccagatttaattcagcagataggaaagtgcgtagagcccggttcaggctagcatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagatttaattcagcagataggaaagtgcgtagagcccggttcaggctagcatggta 380

                                                                       
Query: 181 gcctaggtcacaacattgctgtgggaaggagaaggcacataagcacaccacagacatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctaggtcacaacattgctgtgggaaggagaaggcacataagcacaccacagacatctc 440

                                                                       
Query: 241 aaggtctgacaagaagggaagtggtcttggggtagatctgaccatatcaaggtgactgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtctgacaagaagggaagtggtcttggggtagatctgaccatatcaaggtgactgac 500

                                                                       
Query: 301 tgtaacaggaaggaagctgagattacaatgtcaaaacctgggtaagattccttagttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaacaggaaggaagctgagattacaatgtcaaaacctgggtaagattccttagttctt 560

                                                                       
Query: 361 gctccctagttcactggttagtacaccatgcagggcactaaggtggttagacagaagaag 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctccctagttcactggttagcacaccatgcagggcactaaggtggttagacagaagaag 620

                                                                       
Query: 421 attcataaaaaacaatgataagagttaaccaagtgatgtttcataaaaatgagaatgtcc 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 attcataaaaaacaatgataagagttaaccaaatgatgtttcataaaaatgagaatgtcc 680

                                                                       
Query: 481 acaagttagagaattccgttctgttttctggtttgtctggggaatgccataacaacaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaagttagagaattccgttctgttttctggtttgtctggggaatgccataacaacaaaa 740

                                                                       
Query: 541 ttcaacaataataataatactgcctgctatgattctctgagggttcctgtggttagaagt 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcaacaacaataataatactgcctgctatgattctctgagggttcctgtggttagaagt 800

                                                                       
Query: 601 cactacatagcaagctttccaggccaatggaacagccaggagtcaaaaatctggagtgct 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 cactacatagcaagctttccaggccaatggagcagccaggagtcaaaaatctggagtgct 860

                                                 
Query: 661 gtaccagcagtaaattcacatatactcaactctaggta 698
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtaccagcagtaaattcacatatactcaactctaggta 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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