CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGAATCCCAGGGTGAGGTTATTAAGCAGTAAGCATATGAGA
TAAAAATTACACCAGTCAAATAACACCTACCTTTACCTTAGCTTTATATG
ATCTAAGCTTTGGGTACCATGGATCTTGATTACTAAAGCAAGCAGAGCTG
ATAAGAGCTCCTGAAACTTCTCTTTCATGCATGTTTTCCACATTGATACT
TGAAAAGCTTTCCTCAGAGCACACATTTATTTTCTTTCAGGAAAGAGCTT
TTCAAGACAGAACCATATTAATTCCTCCTAGTTCAATTTCTGAATCATGT
GGCATCTTCAACAATAGGGTATAATTTTCTTTTTCTGGATGGTAAGCAAG
GGCTATGGCAATAAATACTTTTCACAAGCAACTGAAAAGGAGATTTCCCC
ATTTCTGGCACCGGCTTTCTGTTAGGTACTCTAAACTATAAACTATTGTA
TGTCTCTTCAATTAGAATTAGTAGAAAAAAATGATCAGACAGACTTTCAA
ATACATAAAAGGAGCAATTGTATAAGTAAGTCATGTTTTGTCACCAGGGA
TAGGATTTCAAATTAATAAAACTAATGGCATTTATATCAGAATCAGATGT
CTTAAGATTGATAAAGTCTAACTCATTAATCTTTTATCTACTTAATTTTA
TGTTAGAAAGCCAGTTTAAATAAATGAAACTGTCAGTATGATTCTTCCAA
TTTAGGTTCCTCTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAATGCAGTTTTGACATCAGAAG
GGTCAAAATAGTAGTCCATTTATAAAACAGCTTAATAATTACAAATATAA
TTTTAGGAACTCTTATATGATCTTCATTAAGAATTAAGAAATCATCTACT
TATTTATATAGCATCACTACAAAACAGTCCATCTTTCTTATTCTGCAGGA
ATCTTATCAAAAGTGTAGTTAATATCTAGTGATTATTATTATATATAATA
ATAATAGAAAAACGCAGAGTCATCTCTTTTTTTACACCTGCAAGTTTTTA
ACTTCTACTTGTTGGATTTTGTTTGCAACCACTCCCCCACTTAGAACTAA
AGCACTTTCTAACTTAAGGTAGTCAGTATTAAACACATATATACCTACAC
GCTCTTTCTTTAATATGGACAATGAGTGTTATTGAAATTGTTAAATATTG
TTGTAGTGCTGAAGTTATATTTGTTAAAATTGAAAATCATTATCAAACTT
ATTTGAATTGGCAACATTGAGATACTAAAACTCCATAATTAATGTTGTTT
GCAAGATAGGTAATAAATAATAATTGGCACTAGTAATAATTATTCTTGGA
AGTATAAATTGGTGGAGCCCCTATAGCCATAACTATGGAGATTTCTTAAT
AAATTACAATTATTTTTGTTTCATACTTTCTACTCCAATAGCTCAGTTCA
GGGGTCATTGAAGAAAGG

Query= MSMg01no280_f05.b1 MSMg01no280_f05.b1 CHROMAT_FILE:
MSMg01no280_f05.b1 PHD_FILE: MSMg01no280_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:08 2005
         (661 letters)



>mm_chr1_110244621_110245681
          Length = 1061

 Score = 1172 bits (606), Expect = 0.0
 Identities = 646/660 (97%), Gaps = 5/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaagaatcc--cagggtgaggttattaagcagtaagcatatgagataaaaat 62
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatgaagaa-ccaacagggtgaggttattaagcagtaagcatatgagataaaaat 262

                                                                       
Query: 63  tacaccagtcaaataacacctacctttaccttagctttatatgatctaagctttgggtac 122
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacaccagtcaaataaaagttacctttaccttagctttatatgatctaagctttgggtac 322

                                                                       
Query: 123 catggatcttgattactaaagcaag-cagagctgataagagctcctgaaacttctctttc 181
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 323 catggatcttgattactaaagca-gacagagctgataagagctcctgaaacttctctttc 381

                                                                       
Query: 182 atgcatgttttccacattgatacttgaaaagctttcctcagagcacacatttattttctt 241
           ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 ataaatgttttccacattgatacttgaaaagctttcctcagagcacacattcattttctt 441

                                                                       
Query: 242 tcaggaaagagcttttcaagacagaaccatattaattcctcctagttcaatttctgaatc 301
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcaggaaagaacttttcaagacagaaccatattaattcctcctagttcaatttctgaatc 501

                                                                       
Query: 302 atgtggcatcttcaacaatagggtataattttctttttctggatggtaagcaagggctat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgtggcatcttcaacaatagggtataattttctttttctggatggtaagcaagggctat 561

                                                                       
Query: 362 ggcaataaatacttttcacaagcaactgaaaaggagatttccccatttctggcaccggct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcaataaatacttttcacaagcaactgaaaaggagatttccccatttctggcaccggct 621

                                                                       
Query: 422 ttctgttaggtactctaaactataaactattgtatgtctcttcaattagaattagtagaa 481
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttctgttaggtactataaactataaactattgtatgtctcttcaattagaattagtagaa 681

                                                                       
Query: 482 aaaaatgatcagacagactttcaaatacataaaaggagcaattgtataagtaagtcatgt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaaatgatcagacagactttcaaatacataaaaggagcaattgtataagtaagtcatgt 741

                                                                       
Query: 542 tttgtcaccagggataggatttcaaattaataaaactaatggcatttatatcagaatcag 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tttgtcaccagggataggatttcaaattaataaaactaatggcatttatatcagaatcag 801

                                                                       
Query: 602 atgtcttaagattgataaagtctaactcattaatcttttatctacttaattttatgttag 661
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 802 atgtcttaagattgataaagtctaactcattaatcttctatctacttaattttatgttag 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)