BAC Information

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BAC

Clone NameMSMg01-288C10
Chromosome1 (Build37)
Map Location 45,749,302 - 45,749,589
singlet/doubletsinglet
Overlap genenone
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
Downstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288C10.T7 (MSMg01no288_c10.b1)MSMg01-288C10.TJ (MSMg01no288_c10.g1)
ACCAG418054AG418055
length736735
length of high quality
(start - end)
320 (44 - 363)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no288_c10.b1 PHD_FILE: MSMg01no288_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:10 2005CHROMAT_FILE: MSMg01no288_c10.g1 PHD_FILE: MSMg01no288_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCAGGTCTCTCCACACTTCCTCCTGGTGATTTTCTCTACTTTTTTG
GCTCTTACTAAAGTACCCCCTGCACTAGAATCAGAAGTCCCACTGTATCT
CTTCTGCCCTACTAATTGGCTGATCAGCTCTTTATTAACCAATCAGAGGT
GATAGAAAACAATTTTCACATAACATTGAGACCAGAGATGTTTGACCATG
CCATCATCCAGACTATAAGCAGATGTCTGGGTATAGAAATTAGCCTTTGA
GTACACCGTGCACAAAACCAACCCTCAACATTTATTTTCTTCCACTGGTT
GGTCATGTTTTCTTTTTTTTCTCCCCCCCCCTCATTTATTTACTCTTTAA
GGACCTTAATTATACCCCCCAAGGATATTGAAAGGTCTTTTAATTGTGGT
TCAATTATGTTGCATTACTCAGAGTTTGCGAGTTGCTGGGCTCTAGTGCT
GATTTTGGGAAGACTGTAATTCTAGGTAATGTTATATTGTCCTGGCTTTT
TTTTCTTGATTGTTTAATTTCTTGATTTCTGTTGCCTTCTTTGATTCCTA
GGAGAGTATGGTGGCTATGTGTCCCCTGGTAGGAAACTCTTCTGGGATGC
TAATAGGTGTGGCCACTGGACTTTCCAAGTAAAATGTGTTTCTAGGTTTT
GGGAGCTCACACTTAAGAATGGCAATGGGGAGAGGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTCAACTCCTCTTACTCTAGGTCTTC
ATTGACTGTTTTAGAAGGTGGCGAGACAGTGAAAGTCACCAGAAAGATAG
CTAAGTTAGAAACTTAGTCACCAGAGACTCCCAACTAAACAACAAAATGA
AATATTGACCATATCATCAGAAGTCATGTCTGCCTACTTAGGGCTAAGTT
TAAGCCATATGCACCATAAAAGAAGTTATTCTCTCAAACACAGAGCCTAT
GTTACCTGAGAATATTTCTGGTAATGCTTTGAACTATGCATCTACAGTGA
GTGTCTCTAATCTTTTTTATCGCCCCCCACCCTCCTTTGCTTCAAGTTAT
AGATTGGATGGGCCCACCCCCCATTATCTTTACTAGTGACTCTGTGATTA
TTCTGGATTATAATAAACTCATTCCATCATCTGCAGCAGGAACTGTGGTC
TGTTTGTTTGTTTTTTTCCATTTTTCACTAGTATTTAAATCACTTCCTAT
TTTCATAACACCTTATAGCATTTTCATTGTTTTAAAAGGACTTAAATTCT
ACAAAATACCAGAACCACTAAAAGGTCTCTTTCTAAGCTATTCTCTAGAT
TTTTCTGATCAATATAATAATGCAACAAATAGTACTGGACATAGTTTTGT
TTGGATCCTTGTTCTTGGTGGCACAATATTACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_c10.g1 MSMg01no288_c10.g1 CHROMAT_FILE:
MSMg01no288_c10.g1 PHD_FILE: MSMg01no288_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:10 2005
         (291 letters)



>mm_chr1_45749102_45749792
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcaactcctcttactctaggtcttcattgactgttttagaaggtggcgagacagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcttcaactcctcttactctaggtcttcattgactgttttagaaggtggggagacagtga 260

                                                                       
Query: 61  aagtcaccagaaagatagctaagttagaaacttagtcaccagagactcccaactaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcaccagaaagatagctaagttagaaacttagtcaccagagactcccaactaaacaa 320

                                                                       
Query: 121 caaaatgaaatattgaccatatcatcagaagtcatgtctgcctacttagggctaagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgaaatattgaccatatcatcagaagtcatgtctgcctacttagggctaagttta 380

                                                                       
Query: 181 agccatatgcaccataaaagaagttattctctcaaacacagagcctatgttacctgagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccatatgcaccataaaagaagttattctctcaaacacagagcctatgttacctgagaa 440

                                                           
Query: 241 tatttctggtaatgctttgaactatgcatctacagtgagtgtctctaa 288
           ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttctggcaatgctttgaactatgcatctacagtgagtgtctctaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)