Query= MSMg01no288_c13.b1 MSMg01no288_c13.b1 CHROMAT_FILE:
MSMg01no288_c13.b1 PHD_FILE: MSMg01no288_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:10 2005
(370 letters)
>mm_chr1_20688101_20688870
Length = 770
Score = 404 bits (209), Expect = e-117
Identities = 276/313 (88%), Gaps = 25/313 (7%)
Strand = Plus / Minus
Query: 70 ggagcacaccactaagcctaactcctccatggcctctgtatcatttcctgtctctattcc 129
||||||||||| |||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 770 ggagcacaccagtaagcctaactcctccatggcctctgcatcagttcctgcctctattcc 711
Query: 130 tctgtggaattttgaaacagttattcctatggcttttagaatatatacttagaatacact 189
||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 710 tctttggaattttgaaacagttattcctacagcttttaaaatatatactt---------- 661
Query: 190 gaaagaagtgcagagatcttggacagtagaaaaccattgcttttatatttagaatagaat 249
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 660 ---agaagtgcagagatcttgggcagtagaaaaccattgcttttatatttagaatagaat 604
Query: 250 ggtttagatttaaagtaac----------ta--atctttaaaacttctctatctctttca 297
||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 603 ggtttagatttaaagtaacatttttttcataagatctttaaaacttctctctctctttca 544
Query: 298 tctcttatttctctgtggtcagtctaatagagacaataaagagagaagatcctatacaat 357
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 543 tctcttatttctctgtgctcagtctaatagagacaataaagaaagaagatcctatacaat 484
Query: 358 tcattttgaagtt 370
|||||||||||||
Sbjct: 483 tcattttgaagtt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_c13.g1 MSMg01no288_c13.g1 CHROMAT_FILE:
MSMg01no288_c13.g1 PHD_FILE: MSMg01no288_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:10 2005
(290 letters)
>mm_chr1_20512077_20512772
Length = 696
Score = 513 bits (265), Expect = e-150
Identities = 285/295 (96%), Gaps = 6/295 (2%)
Strand = Plus / Plus
Query: 1 acctgtgaaccattacaagacagcaaaaaatcaatg------aatgtgaacttgttttaa 54
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acctgtgaaccattacaagacagcaaaaaatcaatgctactgaatgtgaacttgttttaa 260
Query: 55 atacaaatcagcatatgtctaaaataggtgaacacatttatactcttctacagtcaaata 114
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaaatcagtatatgtctaaaataggtgaacacatttatactcttctacagtcaaata 320
Query: 115 atgagctttagcaactgatattaaatttaaaacacttgttcagtgaagaagtggttgctt 174
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 atgagctttagcaactgatattaaatataaaacacttgttcagtgaagaagtggttgctt 380
Query: 175 gaaattaaaataaaaacaaatactttggaaatatgtggaatttctatgatgaaaaatgaa 234
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattaaaataaaatcaaatactttggaaatatgtggaatttctatgatgaaaaatgaa 440
Query: 235 tataaatatatgagacctcacaagataggcctgaagaagaccctgtgacctgtga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataaatatatgagacctcacaagataggcctgaagaagaccctgtgacctgtga 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 696
Length adjustment: 9
Effective length of query: 281
Effective length of database: 687
Effective search space: 193047
Effective search space used: 193047
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
