Query= MSMg01no288_d01.b1 MSMg01no288_d01.b1 CHROMAT_FILE:
MSMg01no288_d01.b1 PHD_FILE: MSMg01no288_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:13 2005
(706 letters)
>mm_chr1_81141451_81142558
Length = 1108
Score = 1220 bits (631), Expect = 0.0
Identities = 688/711 (96%), Gaps = 9/711 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaatatttcctgtcctctattaatatccttatccaagctttatcccctaagtat 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattcaaatatttcctgttctctattaatatccttatccaagctttatcccctaagtat 781
Query: 65 gtgccaacattcttatttccttaatcttaaagatgaaatatctggaattttcacctggtg 124
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gtgccaacattctcattttcttaatcttaaagatgaaatatctggaattttcacctggtg 721
Query: 125 ttcaggctactccccctcccctgcttccaaacacacaaaagagcaaaataaagatctttg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 720 ttcaggctactccccctcccctgcttccgaacacacaaaagagcaaaataaagatctttg 661
Query: 185 cacagccctgttctaaaacataggaaaattaaagcacatttgtcaagaaggcataaatct 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cacagccctgttctgaaacataggaaaattaaagcacatttgtcaagaaggcataaatct 601
Query: 245 ttggtaagttgtttaaaggaaagatgttttggggaagtggtatatttgggagaaacgacc 304
||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 600 ttggtaagttgtttaaaagaatgatgtttttgggaagtggtatatttgggagaaacgacc 541
Query: 305 aaggctatatatagagatgttcagtttagtgttgtgtgctagg-aaaaaaaaaaggctta 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 540 aaggctatatatagagatgttcagtttagtgttgtgtgctaggaaaaaaaaaaaggctta 481
Query: 364 ggccaccagaacactatttgcaatgtagattaatggacaatttgtgttttccattgtagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggccaccagaacactatttgcaatgtagattaatggacaatttgtgttttccattgtagg 421
Query: 424 tgacttttaaaagtcttctgaataagaatgagcctaatttgtacataaaaaataagtgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgacttttaaaagtcttctgaataagaatgagcctaatttgtacataaaaaataagtgaa 361
Query: 484 tgctggagaatatagaaatgctataggagttcaacaaagggcagaagtgtcagaacgttg 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgctagagaatatagaaatgctataggagttcaacaaagggcagaagtgtcagaacgttg 301
Query: 544 aaaaccagagtgaatctacaggtcacaattagaggagttcagaggtttgtcctttgtaat 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 300 aaaaccagagtgaatctacaggtcacaattagaggagttcagatgtttgtcctttgtaat 241
Query: 604 atactcatggaatatcagacacact-tttgtttt-------ggagttatgtactccatga 655
||||||||||||||||||||||||| ||| |||| || ||||||||||||||||
Sbjct: 240 atactcatggaatatcagacacactattttttttgggggggggggttatgtactccatga 181
Query: 656 cacagaacatcatttaagaatatacatagacccagaaagcactaagaatta 706
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 cacagaacatcattttggaatatacatagacccagaaagcactaagaatta 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1108
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1098
Effective search space: 764208
Effective search space used: 764208
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no288_d01.g1 MSMg01no288_d01.g1 CHROMAT_FILE:
MSMg01no288_d01.g1 PHD_FILE: MSMg01no288_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:13 2005
(239 letters)
>mm_chr1_81020259_81020899
Length = 641
Score = 426 bits (220), Expect = e-124
Identities = 234/240 (97%), Gaps = 4/240 (1%)
Strand = Plus / Plus
Query: 1 atggggacattggaatggaaaaatcattaaaaactatttgaattttaaaaagaagcagaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggggacattggaatggaaaaatcattaaaaactatttgaattttaaaaagaagcagag 260
Query: 61 aaataatgtgaaaatatgacttgcattttttcttttaaaaattattttatttatttacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataatgtgaaaatatgacttgcattttttcttttaaaaattattttatttatttacac 320
Query: 121 cccaattgttgctcccctcacccgtcccattgttcttcacctcaacccccttgcctttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaattgttgctcccctcacccgtcccattgttcttcacctcaacccccttgcctttac 380
Query: 181 ttctgagatagtgctacccccacccccaccccgggggg---accctttctctggggcatc 237
|||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct: 381 ttctgagatagtgctacccc-acccccaccccgggggggggaccttttctctggggcatc 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 641
Length adjustment: 9
Effective length of query: 230
Effective length of database: 632
Effective search space: 145360
Effective search space used: 145360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
