Query= MSMg01no288_i19.b1 MSMg01no288_i19.b1 CHROMAT_FILE:
MSMg01no288_i19.b1 PHD_FILE: MSMg01no288_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:39 2005
(277 letters)
>mm_chr1_92231852_92232533
Length = 682
Score = 499 bits (258), Expect = e-146
Identities = 274/282 (97%), Gaps = 5/282 (1%)
Strand = Plus / Minus
Query: 1 gctgagagagcacgcaccctccttagaagtgtgggtgcctgtgggtaccaccgggaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 482 gctgagagagcacgcaccctccttagaagtgtgggtgcctgtgggtaccagagggaacaa 423
Query: 61 ggaaggatagcgtgccattgcacacaggaatggatgaccaggagggccccaaaggtctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaaggatagcgtgccattgcacacaggaatggatgaccaggagggccccaaaggtctgc 363
Query: 121 ccatcctgcccagg-----gtgtgtgttcggctcacttttgctctttaaggcaactagct 175
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccatcctgcccaggcttgcgtgagtgttcggctcacttttgctctttaaggcaactagct 303
Query: 176 gaagcgcagtgatgaataggagacagcagacactaaaggaacgtgtgcaaagggagtcaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaagcgcagtgatgaataggagacagcagacactaaaggaacgtgtgcaaagggagtcaa 243
Query: 236 ctcggaagcattcaggagtgtccatctagactgtccgcacct 277
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcggaagcattcaggagtgtccatctagactgtccgcacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 682
Length adjustment: 9
Effective length of query: 268
Effective length of database: 673
Effective search space: 180364
Effective search space used: 180364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no288_i19.g1 MSMg01no288_i19.g1 CHROMAT_FILE:
MSMg01no288_i19.g1 PHD_FILE: MSMg01no288_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:39 2005
(359 letters)
>mm_chr1_92055423_92056181
Length = 759
Score = 673 bits (348), Expect = 0.0
Identities = 357/360 (99%), Gaps = 2/360 (0%)
Strand = Plus / Plus
Query: 1 gaatacagacttctctcttttccaggaccccctgcgctccctcagcacaaagatacctgc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gaatacagacttctctcttttccaggaccccctgtgctccctcagcacaaagatacctgc 260
Query: 61 tctgagtgttctggtgatgagacttagcccct-aaggaacccatggacctaagccacagt 119
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 261 tctgagtgttctggtgatgagacttagccc-tgaaggaacccatggacctaagccacagt 319
Query: 120 gtgcactttgggtaactccgggaggttttctgtaagactgcagctgtgtgccaggaagac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgcactttgggtaactccgggaggttttctgtaagactgcagctgtgtgccaggaagac 379
Query: 180 cacacccacacgtcacatctcttcagggacatcgagcgggaagttgtgtcctttctttac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacacccacacgtcacatctcttcagggacatcgagcgggaagttgtgtcctttctttac 439
Query: 240 cccattgcatcgcacatttcctataatatccctgctcattattctgcatggcacaggaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccattgcatcgcacatttcctataatatccctgctcattattctgcatggcacaggaca 499
Query: 300 tggcttattccccgttagcatttcataatatttgctattagaaagtaagtcctatgacag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggcttattccccgttagcatttcataatatttgctattagaaagtaagtcctatgacag 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
