BAC Information

Click to search

BAC

Clone NameMSMg01-288N03
Chromosome1 (Build37)
Map Location 29,820,322 - 29,820,690
singlet/doubletsinglet
Overlap genenone
Upstream geneGm597, LOC435614, EG623924, EG433283, LOC100040665
Downstream geneLOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288N03.T7 (MSMg01no288_n03.b1)MSMg01-288N03.TJ (MSMg01no288_n03.g1)
ACCAG418543AG418544
length758757
length of high quality
(start - end)
239 (129 - 367)368 (385 - 752)
definitionCHROMAT_FILE: MSMg01no288_n03.b1 PHD_FILE: MSMg01no288_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:59 2005CHROMAT_FILE: MSMg01no288_n03.g1 PHD_FILE: MSMg01no288_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTGCTGATGCTCACATCTATGGTTTCAGATTTCTTTTCTAGTG
TTTCTATCTCCAGCGTTGCCTCACTCCGGTCTTTCTTTATTGTGTCTACT
TCCCTTTTTAGGTCTAGTATGGTTTTGTTGATTTCCATCACATGTTTGGA
TATGTTTTCTGTTTTTCTTTAAGGACCTCCACCTCTTTGGTTGTGTTTTC
TTGTTTTTCTTTAAGGACTTGTAACTCTTTAGCAGTGTTCTCCTGTATTT
CTTTAAGTGAGTTATTAAAGTCCTTCTTGTTTTCCTCTACCATCATCAAG
AGATATGCTTTTAAATCTTTGTCTAGCTTTTTGTGCGTGTCGGGGTGCCC
AGGACTGGCTGAGGTGGGAGTGCTGGTTTCTGATGATGGAGATTGGTCTT
GGTTTCTGTTATTAAGATTCTTATGTTTGCCGGGGCCTAGCAAACACAGA
AGTGTATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGA
GGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGG
CGGAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCT
GCATATGTATCAAAAGATGGCCTATTTGGCCATCACTGGATAGAGAGGCC
CATTTGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGTC
ATATAGGG
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTCTCTGTCTTTTTTTCTCGTTTTCCT
TCTCATTCTCATGTACACAAATACACATGTATTTGAATATATGTAAGAGT
ACTATTTGGGACATTAATTTTGATTATTCTCAACCTCTTTTTATTTTTAC
TTACATATTAGAATGCGAATGAAAAGTAGACATGGCATCATAAAGGATAT
TTAATTGATAAACTTTAGATTCATTCTGTTAATACTTGTTTTAGTGACCA
GTCTTCATTACTGGAGCACATAATGAATATTACTACATGAAGTAGACTAT
GATCATATAAACAAATATTAAGTGTTATACGCGGAATACTAGAAAAAAAT
CTGAAATATTATTCACTGTAGGTTCTTCACCTGGGAACCTATGTAATAAC
CTTCAGAAACACCAACCAGCAAGCAGTTCAGTTTTATAATGCTTGATAGA
TATGCTTATGGGGCATAATTCAACTTAGCATTTGTAGACAACTTGTTTAT
GAACATTTCAGAAACAACATCCTTACTAGCTCTCGGGTGCTAAAACAAAT
TATATTTTAAAAGAAATAATGATATGTGAAAAATTATGTTTTTTTATGAA
TTGAAAGCTCTTGATTTTTTTAGAGGATGCAAGTTTATGAAGTTTTATTT
TCTCAACTCAATATTATATCCTCTTAATATACAAATATGAAAAATGTCAA
CCAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_n03.g1 MSMg01no288_n03.g1 CHROMAT_FILE:
MSMg01no288_n03.g1 PHD_FILE: MSMg01no288_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:59 2005
         (368 letters)



>mm_chr1_29820122_29820890
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatactagaaaaaaatctgaaatattattcactgtaggttcttcacctgggaacctatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatactagaaaaaaatctgaaatattattcactgtaggttcttcacctgggaacctatgt 260

                                                                       
Query: 61  aataaccttcagaaacaccaaccagcaagcagttcagttttataatgcttgatagatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaccttcagaaacaccaaccagcaagcagttcagttttataatgcttgatagatatg 320

                                                                       
Query: 121 cttatggggcataattcaacttagcatttgtagacaacttgtttatgaacatttcagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatggggcataattcaacttagcatttgtagacaacttgtttatgaacatttcagaaa 380

                                                                       
Query: 181 caacatccttactagctctcgggtgctaaaacaaattatattttaaaagaaataatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacatccttactagctctcgggtgctaaaacaaattatattttaaaagaaataatgata 440

                                                                       
Query: 241 tgtgaaaaattatgtttttttatgaattgaaagctcttgatttttttagaggatgcaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaaaaattatgtttttttatgaattgaaagctcttgatttttttagaggatgcaagt 500

                                                                       
Query: 301 ttatgaagttttatttt-ctcaactcaatattatatcctcttaatatacaaatatgaaaa 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgaagttttatttttctcaactcaatattatatcctcttaatatacaaatatgaaaa 560

                    
Query: 360 atgtcaacc 368
           |||||||||
Sbjct: 561 atgtcaacc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space:   272840
Effective search space used:   272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)