Query= MSMg01no288_p03.b1 MSMg01no288_p03.b1 CHROMAT_FILE:
MSMg01no288_p03.b1 PHD_FILE: MSMg01no288_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:09 2005
(607 letters)
>mm_chr1_195236329_195237334
Length = 1006
Score = 1058 bits (547), Expect = 0.0
Identities = 589/605 (97%), Gaps = 6/605 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttaaatctttcgccgtaagaaaaagtaactgtagtcacatttattttattac 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaaatcttt-gccgtaagaaaaagtaactgtagtcacatttattttattac 263
Query: 65 tgctcaaattgaacattgccatctgcatttcttttctcgtggctcagtttttggtctcac 124
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 tgctcaaattgaacgttgccatctgcatttcttctctcgtggctcagtttttggtctcac 323
Query: 125 tttgtcattttactcccatggtgtagatattagtttcttactgtctctattacagattga 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 tttgtcattttactcccatggtgtagatattagtttcttactgtctctataacagattga 383
Query: 185 ctaaaagcggtgtgattttaaacagcagagatgtattttctcctggttctggaagccagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaaaagcggtgtgattttaaacagcagagatgtattttctcctggttctggaagccagt 443
Query: 245 ctgaaattaaggtgtaggcagagccatgctccctttgaagctgctgaaggcaactctgtc 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaaattaaggtataggcagagccatgctccctttgaagctgctgaaggcaactctgtc 503
Query: 305 tctcttcttcctagcttcagagtggcccaccttctctgtgtgaccccgcattctgtctcc 364
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 504 tctcttcttcctagcttcagaggggcccaccttctctgtgtgaccccgcattctatctcc 563
Query: 365 atgtggctacattccccattgtctgagtatctgtgtaaggacagaaatccctttgctgag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgtggctacattccccattgtctgagtatctgtgtaaggacagaaatccctttgctgag 623
Query: 425 caagcattttagcaaagtcattcca--ttttaaggcctcagttgcaggtccagtgtgcta 482
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 624 caagcattttagcaaagtcattccaagt---aaggcctcagttgcaggtccagtgtgctt 680
Query: 483 ggactttagtgtcttccctagggacacgatccagccctcactcaccagtgctgatgtttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggactttagtgtcttccctagggacacgatccagccctcactcaccagtgctgatgtttc 740
Query: 543 ttaccagttactgatcatcttgctcatctcttttctgatcctttggttcatacgtgctgc 602
||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 ttaccagttactgatcaccgtgctcatctcatttctgatcctttggttcatacgtgctgc 800
Query: 603 tctgt 607
|||||
Sbjct: 801 tctgt 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_p03.g1 MSMg01no288_p03.g1 CHROMAT_FILE:
MSMg01no288_p03.g1 PHD_FILE: MSMg01no288_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:09 2005
(290 letters)
>mm_chr1_195416320_195417009
Length = 690
Score = 559 bits (289), Expect = e-164
Identities = 289/289 (100%)
Strand = Plus / Minus
Query: 1 ttcctctgagcagccttccctggctcctctggagagcagctccctcctccaggcgtctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttcctctgagcagccttccctggctcctctggagagcagctccctcctccaggcgtctgt 430
Query: 61 ggtgcttcctataatcacagagtccctggacttgtccgcctgtcatctagtctctgttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggtgcttcctataatcacagagtccctggacttgtccgcctgtcatctagtctctgttta 370
Query: 121 ttccccttcctgcccctgagggcagagcagagttctttttcacctgccttccttcaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttccccttcctgcccctgagggcagagcagagttctttttcacctgccttccttcaggga 310
Query: 181 gcacaacactgagcctgcatatcatatggttgggaaagctctaactgaatatggttggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcacaacactgagcctgcatatcatatggttgggaaagctctaactgaatatggttggga 250
Query: 241 aagctctaactgaatggtaaatgacttctctctcttccacactccctcc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagctctaactgaatggtaaatgacttctctctcttccacactccctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
