BAC Information

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BAC

Clone NameMSMg01-288P17
Chromosome1 (Build37)
Map Location 181,104,875 - 181,105,171
singlet/doubletsinglet
Overlap geneSmyd3
Upstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288P17.T7 (MSMg01no288_p17.b1)MSMg01-288P17.TJ (MSMg01no288_p17.g1)
ACCAG418660AG418661
length744742
length of high quality
(start - end)
355 (382 - 736)296 (441 - 736)
definitionCHROMAT_FILE: MSMg01no288_p17.b1 PHD_FILE: MSMg01no288_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:12 2005CHROMAT_FILE: MSMg01no288_p17.g1 PHD_FILE: MSMg01no288_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCTCAACTGATGACTACCAAATGGCTGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCTTGGACCCGCAAATCAAAACAACCCTG
AGATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGCT
GGTAGGATTGCAAACTTGTACAACCACTCTGGAAGTCATTCTGGAGGTTC
CTCAGAAAATTGGACGCAATACTACCTTTTTATCCAGCAATACCTCTCCT
GGGCATATACCCAGAAGATGTTCCAACTGGTAAGAAAGAGACATGCTCCA
CCATGTTCATAGCAACCTTATTTACAACAGCCAGAAGCTGGAAAGAACCC
AGATGTCCCTCAACAGAAGAATGGATACAGAATATGTGGTACATTTACAC
AATGGAGTACTACTCAGCAATTAAAAACAATGGATTTATGAAATTCTTGG
ACAAATGGATGTATCTGGAGGATATCAACCTTAGTGAGGTAACCCAATCA
CAAAAGAAGTCATTAGATATGCATTCACTGATACGTGGATATTAGCCCAG
AAACATAGAACACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAA
GAGGGAAGACCAATGGGTGGATACTTCATTCCTCCTTAGATTGG
NATCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGCCATTCTTAGTCAG
GGACTGTTGTGTCTGTTTGTCACCTCACCCGCCGACTCTATGCCCATCTG
TCTGAGACCTTGATTCGCACGGATTGAGGAGGGCCCACTGAGCCCCGTCT
CTTGCATTGTATCTGTTTGTCACCCGCCAGCTCTATGCCCATCTGTCCGA
GACTCTGATTTACACGGATTGAGGAGGGCCCACTGAGCCCCGTCCCTGGC
AAGGGACCATGTTAACCGTGTGTTTCCAGTTTTAGTATGTATATGGCCGG
AGTGAGCGGTGAGTGGTTTTTGATGTGCGCCTCCACCGAGAAACCTATGG
GTTTCCCCCACCTTGGCTTTTTTCCTTGTCTACAAAAATTACTTCTCCCC
TCTCCTGAGCCATATTTACTAAAAGGAACCTCTTACAGATGCCCAGTGAT
GCTGGAGAAGGCGAGAAGTGCCTTGACTGATTATACAAGGGTTAAATAAA
TGCACAGAAGTGGTGGGTTCCCACTCTCCCTCTCCCTGTGCTTGTGGCTT
TATTAGAGGAAGACAAGCGGAGTCAGGCAGACATGCGAGCTCATCCTTAC
TTGTTGGCTGTCACAGGACTCACAATGAACTCTTTAAACTTTGGATCTTC
CTTTTTCTCCACTGTAAAACAAAAGAAATCAGGCTTGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_p17.g1 MSMg01no288_p17.g1 CHROMAT_FILE:
MSMg01no288_p17.g1 PHD_FILE: MSMg01no288_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:12 2005
         (296 letters)



>mm_chr1_181104675_181105371
          Length = 697

 Score =  559 bits (289), Expect = e-164
 Identities = 295/297 (99%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctcccctctcctgagccatatttactaaaaggaacctcttacagatgcccagtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acttctcccctctcctgagccatatttactaaaaggaacctcttacagatgcccagtgat 438

                                                                       
Query: 61  gctggagaaggcgagaagtgccttgactga-ttatacaagggttaaataaatgcacagaa 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 gctggagaaggcgagaagtgccttgactgatttatacaagggttaaataaatgcacagaa 378

                                                                       
Query: 120 gtggtgggttcccactctccctctccctgtgcttgtggctttattagaggaagacaagcg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtggtgggttcccactctccctctccctgtgcttgtggctttattagaggaagacaagcg 318

                                                                       
Query: 180 gagtcaggcagacatgcgagctcatccttacttgttggctgtcacaggactcacaatgaa 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 317 gagtcaggcagacatgcgagctcatccttacctgttggctgtcacaggactcacaatgaa 258

                                                                    
Query: 240 ctctttaaactttggatcttcctttttctccactgtaaaacaaaagaaatcaggctt 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctctttaaactttggatcttcctttttctccactgtaaaacaaaagaaatcaggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space:   197456
Effective search space used:   197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)