Query= MSMg01no289_l01.b1 MSMg01no289_l01.b1 CHROMAT_FILE:
MSMg01no289_l01.b1 PHD_FILE: MSMg01no289_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:03 2005
(555 letters)
>mm_chr1_70175033_70175987
Length = 955
Score = 973 bits (503), Expect = 0.0
Identities = 539/551 (97%)
Strand = Plus / Plus
Query: 5 gaattcctgggtcttttctcccaattgtatttcaaagttcacagttgtttcagtgaaccg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgggtcttttctcccaattgtatttcaaagttcacagttgtttcagtgaaccg 264
Query: 65 tgtgtttgcctgttacctggtgctgaaaatttttttttgtaaggttgcgttggataggaa 124
|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tgtgtttgccagttaattggtgctgaaaatttttttttgtaaggttgcattggataggaa 324
Query: 125 tattcagtcccattcatcctgtggtattatgtttttaaaagaatgtaattagggaaatat 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattcagtaccattcatcctgtggtattatgtttttaaaagaatgtaattagggaaatat 384
Query: 185 ttttaaagaaatgtagacttcctgaactgtttgtttttcggtgaacaggcaagacttgta 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaaagaaatgcagacttcctgaactgtttgtttttcggtgaacaggcaagacttgta 444
Query: 245 atcataatatctgagaaatggaatggaagaatgaactatcactggagcttgtacaaaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcataatatctgagaaatggaatggaagaatgaactatcactggagcttgtacaaaaat 504
Query: 305 aaaggattcttgccttacagtaatttggtagtagtgtgaatactgatgatcctgacttaa 364
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 aagggattcttgccttacagtaatttggtagtagtgtgaatactgatggtcctgacttaa 564
Query: 365 atcgttcaacccacaatttttcaacattatgacggtggcaaaagagtatatactcagtaa 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcgttcaacctacaatttttcaacattatgacggtggcaaaagagtatatactcagtaa 624
Query: 425 atcttacacatttgatcctttctctaggctagccataattcagaaaaatactctctcaag 484
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcttacatatttgatcctttctctaggctagccataattcagaaaaatactctctcaag 684
Query: 485 atgctggtctatagcagcattgagccatcatgcagtcaatcattggatgcccagagaaag 544
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 685 atgctggtctatagcagcattgagccatcatgcagtcaatcattggctgccaagagaaag 744
Query: 545 aacagagacac 555
|||||||||||
Sbjct: 745 aacagagacac 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_l01.g1 MSMg01no289_l01.g1 CHROMAT_FILE:
MSMg01no289_l01.g1 PHD_FILE: MSMg01no289_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:03 2005
(180 letters)
>mm_chr1_70355312_70355887
Length = 576
Score = 304 bits (157), Expect = 3e-87
Identities = 172/179 (96%), Gaps = 4/179 (2%)
Strand = Plus / Minus
Query: 2 ataatttaagtcctttattccactagcactgtttcctagtgctttaagtaatttatattc 61
|||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct: 376 ataatttaagtcctttattccatt----ctctttcctagtgctttaagtaatttatattc 321
Query: 62 attgccaacatagaaagtattgtcctaaaagcaaggatatctacaggaatgacttatttc 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 attgccaacatagaaagtattgtcctaaaagcaaggatatctacaggaatgactcatttc 261
Query: 122 cttctagttgttaagtctttctatttgaacattaatttattttttcatttttatttgat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttctagttgttaagtctttctatttgaacattaatttattttttcatttttatttgat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 576
Length adjustment: 8
Effective length of query: 172
Effective length of database: 568
Effective search space: 97696
Effective search space used: 97696
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
