CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTTCTGACACTTGAAAATCATATCACACAGATCTTTCACTTG
CTTAGTTAGAGTCCCACCTAGGTACTTTATATTATTTTTGACTATAGTGA
AGGGTGTTATTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGTGTAG
AGGAAGGCCACTGATTTGTTTGAGTTAATTTTAAATCCAGCTGAAGTTGT
TTATCAGGTTTAGTAGTTCTTTGGTGGAGTTTTTTGGTGTCAATTATGTG
TATTTTCATATCATCTGCAAATAGTGATAGTTTGATTCTTCCTTTCCAAT
TTTTATCCCTTTGACCTCCTTTGCTTGTCTAATTTCTCTGTCCTGGATTT
CAAGTACTATATTGCCCCACCAAGGGAGAGGGTGCACAGCCATGTGTAGT
TCCTGATTTTAGCGGGATTTTTTTTTCCAAGTTTCTCTCCATGTAGGTTG
ATGTTGGCTACTGGTTTGCTGTATATTACTGTTACTATGTTAAGGTATGT
GCCTTGAATTCCTGATCTTTCCAAGACTTTTGTCATGTTGGATTTTGTCA
AATGCATTCTGAGCATCTAATGAGATGATCATGTATCTTTTTTCTTTGAG
TCTGTTTATGTAGGGGATTATATTGATGTATTCATGTGTGGNTAAACATC
CCTGCATCCCTGAGATGAAGCCTACTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGATGTACAGGTTGAAAGAA
CCATGTGAAACAAAATTAAGATCTCCCCCAGCTGCAAACTCCAATGTCAA
CTGAATAAACAAGAGAGTTATAACATGCTAAATTGAGCACATTGCCGTAC
AAATTTCCTGGCAAAACTCTTAAGGTAAGGATTCTCTGGTTTTCAGATGA
GAAAACTTCAAGGCCACAATAATGCATGGAAAGTGAAGTTCCCCTAAATG
TCTTCTGAGCATCCCAGGTCCAATTCTTCTTCCCAAGAGCCAAATGCCCA
AGATAATTGTTTTTTTGTGACATAGCACAAGTAATTGACTGAGGTACCAA
CCTGAAAAATCCGCCCATACCCACCCCCAGGAATACCGGGGTGCATGCAT
CGTACCCAACAAGGTACTTCTCTTAACAGAGAGGAGTTGTTTCTGATAAA
GAATATATTTTAGGGCTGGAGAGGTAGCTCAATGGTTAAGAGCACAGGCT
ACTCTACCAGAAGACCCAGGCTCAATTCCCAGCATCCAAATCACAGCTCA
CAACTGACTGTAGCATTACTTCCAGGAGATCCGACACCCTCATACAGATA
TATGCAAGCATTGAAACAATGGTTTTTTTTTAAGTAATACATTTTAGCCA
GTTGTGGTGGTCCATACCTTTAATCCCAGAA

Query= MSMg01no289_l09.g1 MSMg01no289_l09.g1 CHROMAT_FILE:
MSMg01no289_l09.g1 PHD_FILE: MSMg01no289_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:05 2005
         (500 letters)



>mm_chr1_31242702_31243602
          Length = 901

 Score =  890 bits (460), Expect = 0.0
 Identities = 491/504 (97%), Gaps = 7/504 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagctgcaaactccaatgtcaactgaataaacaagagagttataacatgctaaattgag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 586 ccagctgcaaactccaatgtcaactgaataaacaagagagttacaacatgctaaattgag 527

                                                                       
Query: 61  cacattgccgtacaaatttcctggcaaaactcttaaggtaaggattctctggttttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cacattgccgtacaaatttcctggcaaaactcttaaggtaaggattctctggttttcaga 467

                                                                       
Query: 121 tgagaaaacttcaaggccacaataatgcatggaaagtgaagttcccctaaatgtcttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgagaaaacttcaaggccacaataatgcatggaaagtgaagttcccctaaatgtcttctg 407

                                                                       
Query: 181 agcatcccaggtccaattcttcttcccaagagccaaatgcccaagataattgttttttt- 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 406 aacatcccaggtccaattcttcttcccaagagccaaatgcccaagataattttttttttt 347

                                                                       
Query: 240 -gtgacatagcacaagtaattgactgaggtaccaacctgaaaaatccgcccataccc--a 296
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 346 tgtgacatagcagaagtaattgactgaggtaccaacctgaaaaatccgcccata---tga 290

                                                                       
Query: 297 cccccaggaataccggggtgcatgcatcgtacccaacaaggtacttctcttaacagagag 356
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtcccaggaataccggggtgcatgcatcgtacccaacaaggtacttctcttaacagagag 230

                                                                       
Query: 357 gagttgtttctgataaagaatatattttagggctggagaggtagctcaatggttaagagc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gagttgtttctgataaagaatatattttagggctggagaggtagctcaatggttaagagc 170

                                                                       
Query: 417 acaggctactctaccagaagacccaggctcaattcccagcatccaaatcacagctcacaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 acaggctactctaccagaagacccaggctcaattcccagcatccaaatcacagctcacaa 110

                                   
Query: 477 ctgactgtagcattacttccagga 500
           ||||||||||||||||||||||||
Sbjct: 109 ctgactgtagcattacttccagga 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space:   436590
Effective search space used:   436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)