Query= MSMg01no289_o05.b1 MSMg01no289_o05.b1 CHROMAT_FILE:
MSMg01no289_o05.b1 PHD_FILE: MSMg01no289_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
(326 letters)
>mm_chr1_165506649_165507375
Length = 727
Score = 567 bits (293), Expect = e-166
Identities = 314/321 (97%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgaagtacttttatttgttttagggctgagctggcagctgattctcacagga 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaagtatttttatttgttttagggctgagctggcagctgattctcacagga 264
Query: 65 cacaggattggccggcaactgaattttaaattaggcaa-tttttttcataattcttatga 123
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 265 cacaggattggcaggcaactgaattttaaattaggcaattttttttcataattcttacga 324
Query: 124 ctcataaatctaaacaaaattccaaaatttaaatgttaagactgtgaagacctaaagcga 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ctcataaatctaaacaaaattccaaaatttaaatgttaaaactgtgaagacctaaagcga 384
Query: 184 cctgttctttgtgggttttaattaatgaggacagtgggtggatctctgcttgcagatatg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 cctgttctttgtgggttttaattaatgaggacagtgggtggatctctgcttgcagacatg 444
Query: 244 ggccactaccatggaggctaactttacttttgttgtctttgtattcaactatattttcct 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ggccactaccatggaggctaactttactgttgttgtctttgtattcaactatattttcct 504
Query: 304 ttatgtttttgttctgttttg 324
|||||||||||||||||||||
Sbjct: 505 ttatgtttttgttctgttttg 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 727
Length adjustment: 9
Effective length of query: 317
Effective length of database: 718
Effective search space: 227606
Effective search space used: 227606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_o05.g1 MSMg01no289_o05.g1 CHROMAT_FILE:
MSMg01no289_o05.g1 PHD_FILE: MSMg01no289_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
(289 letters)
>mm_chr1_165687594_165688282
Length = 689
Score = 551 bits (285), Expect = e-161
Identities = 288/289 (99%)
Strand = Plus / Minus
Query: 1 atacttctcaagtttacttatcgtggtttgcataaaattactcttcactcacttacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atacttctcaagtttacttatcgtggtttgcataaaattactcttcactcacttacacat 430
Query: 61 tgtagataatggttatttgcctataaacctaacaggtactgagtcttatttaccctcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtagataatggttatttgcctataaacctaacaggtactgagtcttatttaccctcctg 370
Query: 121 ctccgtggacactttcagaacaaacgggcagttgtttttgaaacacttgccatttttatg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctctgtggacactttcagaacaaacgggcagttgtttttgaaacacttgccatttttatg 310
Query: 181 atgcttggaactctcttgccttgttgcttgtgcacttttttaatggctcaagtctccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atgcttggaactctcttgccttgttgcttgtgcacttttttaatggctcaagtctccttc 250
Query: 241 tttcacggtgtttactctggagctggtgtgaacagaggctcttggaaat 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttcacggtgtttactctggagctggtgtgaacagaggctcttggaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
