Query= MSMg01no290_a08.b1 MSMg01no290_a08.b1 CHROMAT_FILE:
MSMg01no290_a08.b1 PHD_FILE: MSMg01no290_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:27 2005
(317 letters)
>mm_chr1_18580767_18581483
Length = 717
Score = 582 bits (301), Expect = e-171
Identities = 310/313 (99%)
Strand = Plus / Minus
Query: 5 gaattctatttcattcctcaaaaaccttgaggcttttgcttctttaagtggaagtttgtt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattctatttcatttctcaaaaaccttgaggcttttgcttctttaagtggaagtttgtt 303
Query: 65 cttttagatacttccccatatatttgccaagtaataatttgtctgccaaaatactttcag 124
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cttttagagacttctccatatatttgccaagtaataatttgtctgccaaaatactttcag 243
Query: 125 gggttaagaatgaaggagatgatatccaaacatttaactgtaatggttaatagtgccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gggttaagaatgaaggagatgatatccaaacatttaactgtaatggttaatagtgccaaa 183
Query: 185 ataaatggatttagagtcacctaggagacacaccatgtctgtgaaggcatttccaaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ataaatggatttagagtcacctaggagacacaccatgtctgtgaaggcatttccaaagaa 123
Query: 245 gcttatctaaggaaggacagtctatcctgtgtttgggcattactgtcttatgagctggag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcttatctaaggaaggacagtctatcctgtgtttgggcattactgtcttatgagctggag 63
Query: 305 tctctgaagacaa 317
|||||||||||||
Sbjct: 62 tctctgaagacaa 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_a08.g1 MSMg01no290_a08.g1 CHROMAT_FILE:
MSMg01no290_a08.g1 PHD_FILE: MSMg01no290_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:27 2005
(645 letters)
>mm_chr1_18404971_18406012
Length = 1042
Score = 1185 bits (613), Expect = 0.0
Identities = 636/645 (98%), Gaps = 3/645 (0%)
Strand = Plus / Plus
Query: 1 tctcaaaatcttggctattattactgtcttccttagtgtgtgaatttacctctgttaacc 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tctcaaaatcttggctattattactgtcttccttagtgtgtgaatttaaatctgttaacc 260
Query: 61 atagttcccaggtgtgaaaggctaaagctgaaacctgtaacatcgaatatgcattattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagttcccaggtgtgaaaggctaaagctgaaacctgtaacatcgaatatgcattattta 320
Query: 121 gcttcgaatctttggaaaaacctaataaggaaaatctgcattaaactaacacaaaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcgaatctttggaaaaacctaataaggaaaatctgcattaaactaacacaaaagaaa 380
Query: 181 cctagagacaggtgccttacttaacggaggattcaattcctaatatttgttatttaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagagacaggtgccttacttaacggaggattcaattcctaatatttgttatttaaata 440
Query: 241 caaaacttttctatattcaagtgtgattgaatttagaatgactttaaatctacacatttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaacttttctatattcaagtgtgattgaatttagaatgactttaaatctacacatttg 500
Query: 301 tcaggaccatacagactgtatgtagtgaaagatgtctgcatttaaccaaactttaattta 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tcaggaccatacagactgtatgtagtgaaagatgtctgcatttaagcaaactttaattta 560
Query: 361 gttattattaaataatgacaattgaacaagtgatcctccctttagggggtactataattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gttattattaaataatgacaattgaacaagtgatcctccctttagggggtactataactt 620
Query: 421 ctaccaactaaagagtagtaagcttcacaataattaaaaagactgtgcttatgttaattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaccaactaaagagtagtaagcttcacaataattaaaaagactgtgcttatgttaattg 680
Query: 481 tagtgcttgtcaacaaatgtggtcattctgttaaaaaaaaaaaaaccaacctattacagt 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tagtgcttgtcaacaaatgtggtcattctgttaaaaaaaaaa---ccaacctattacagt 737
Query: 541 aacagtgggaatattttgtacacatgtcaatgaacttcctcggagaaggactcttgaatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aacagtgggaatattttgtacacatgtcaatgaacttcctcggagaaggactcttgaatg 797
Query: 601 ctggaggaggtgctaggtcaatggcaatccatttctttttctttc 645
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 798 ctggaggaggtactaggtcaatggcaatccatttctttttctttc 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1042
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1032
Effective search space: 655320
Effective search space used: 655320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
