BAC Information

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BAC

Clone NameMSMg01-290F15
Chromosome1 (Build37)
Map Location 69,117,534 - 69,311,510
singlet/doubletdoublet
Overlap geneErbb4, LOC667842
Upstream genenone
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290F15.T7 (MSMg01no290_f15.b1)MSMg01-290F15.TJ (MSMg01no290_f15.g1)
ACCAG419656AG419657
length718723
length of high quality
(start - end)
319 (371 - 689)236 (421 - 656)
definitionCHROMAT_FILE: MSMg01no290_f15.b1 PHD_FILE: MSMg01no290_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:52 2005CHROMAT_FILE: MSMg01no290_f15.g1 PHD_FILE: MSMg01no290_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,311,192 - 69,311,510)(69,117,534 - 69,117,769)
sequence
NCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCTGTGTGACCAGGCTCTGGAAGAATTGAGCACCACTAGAA
CTTGTCATAGTTCAGTTATTCTCTTCCGCTTATGATGTGGGAATACTTGG
ACAAGTGTGCAATAGAAAACAAATTATGTCCATACACCCATATATGGAGA
GAGATTTGTGTTTGAAAGAGGATGGAATATATAAGTATATGTGATGCATA
TATGAAAAAGACCACAGGCTCATTGTATTTGTCTGCGCACCACTTAATAA
AGTGTTATTGTATCTCCTGTTGTTTGCTATTAGGAAAAAAGCATATAACT
GCCCTTTTTTGTCAGAAGGTTGTTTGTAACTTTGAGAGACATTGAGGATT
AATTTTCCTTGTTATCACCTGTTATTATTTGGCTCAGACTTCTGTATAAC
AAGAAAGCACAATAAGTTAAATTTGATTTAAGGCCCTGATATCAATTGAG
AATCAATGCATCCTAAGAGAAAGTAATACGTTTGTGAAATGAATTTAGAA
AGCGTGAGATTTCGTTCGTGTTACCGAATCTAGAGATCTTAAAGGGATGC
ATTTGGCCTCTTGACTATAAATAGACCATTTTCTTTTCTATTAGCTCTCA
TCTCACTCACTAAAGTCCCTTCTGATCTTCTGCTGCCTCTCATTGTTCAT
TGTTTTGTGCTCTGTATN
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCACACACAGTTGAGTTCTCTT
TCCTTGGGGCTGGTTACCTAGCTGCCCTAATCACTAGGTAATTAAAATAA
AACCCACTCTAGATAATTGGCCATCTTCTCTAATTGAAAACTAGGTAGAT
AATCATTAGGCCCAGGGAAATGCCTGACTCTCGTACTGTAATATCAACTA
CCATCTGTCTATTAAATTAATCATTGTAAAATATTAACATATAAATGACT
ACTACAGGGGTGTTTTCGAAAGCGGCCCTAAAAGTTAATTAATTTTTTTT
TCATTTTGGTGACTCGTCCATGCCACTCGACGAAACAGTAAGTAAAAGAA
TTCAAAGGCTGAAGAGGAGGAGAGAATAACATTTCTCAGGCAGCACAGGC
ATATCTAGAAAGTTTATAATTGTTAACTTTGCAATCTAAAACATTTGTTC
TCATTCAAAAACAAAAAATCAACACTGATCCAAGAAGACAAAAGAATCCA
CACCCGAAAAAATTCAATACATCCATGGAAGTTGAGAGAGCGGTATTTTT
TTTAGTTCATGCTACACATATATTCACTGACAGAAACAGATGTTCAGGAA
TAAGGTGAAAAATATAACTACCATTATAATAAATTTTCCAGTGCGTACAA
ATTCTTGAGCATATTGGACATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_f15.b1 MSMg01no290_f15.b1 CHROMAT_FILE:
MSMg01no290_f15.b1 PHD_FILE: MSMg01no290_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:52 2005
         (319 letters)



>mm_chr1_69310992_69311710
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgtaactttgagagacattgaggattaattttccttgttatcacctgttattattt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtttgtaactttgagtgacattgaggattaattttccttgttatcacctgttattattt 460

                                                                       
Query: 61  ggctcagacttctgtataacaagaaagcacaataagttaaatttgatttaaggccctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggctcagacttctgtataacaagaaagcacaataagttaaatttgatttaaggccctgat 400

                                                                       
Query: 121 atcaattgagaatcaatgcatcctaagagaaagtaatacgtttgtgaaatgaatttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atcaattgagaatcaatgcatcctaagagaaagtaatacgtttgtgaaatgaatttagaa 340

                                                                       
Query: 181 agcgtgagatttcgttcgtgttaccgaatctagagatcttaaagggatgcatttggcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agcgtgagatttcgttcgtgttaccgaatctagagatcttaaagggatgcatttggcctc 280

                                                                       
Query: 241 ttgactataaatagaccattttcttttctattagctctcatctcactcactaaagtccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgactataaatagaccattttcttttctattagctctcatctcactcactaaagtccct 220

                              
Query: 301 tctgatcttctgctgcctc 319
           |||||||||||||||||||
Sbjct: 219 tctgatcttctgctgcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_f15.g1 MSMg01no290_f15.g1 CHROMAT_FILE:
MSMg01no290_f15.g1 PHD_FILE: MSMg01no290_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:52 2005
         (236 letters)



>mm_chr1_69117334_69117969
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaataacatttctcaggcagcacaggcatatctagaaagtttataattgttaacttt 60
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaataacatttctcaagcaacacaggcatatctagaaagtttataattgttaacttt 260

                                                                       
Query: 61  gcaatctaaaacatttgttctcattcaaaaacaaaaaatcaacactgatccaagaagaca 120
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gcaatctaagacatttgttctcattcaaaaacaaaaaatcaacactgaaccaagaagaca 320

                                                                       
Query: 121 aaagaatccacacccgaaaaaattcaatacatccatggaagttgagagagcggtattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaatccacacccgaaaaaattcaatacatccatggaagttgagagagcggtattttt 380

                                                                   
Query: 181 tttagttcatgctacacatatattcactgacagaaacagatgttcaggaataaggt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagttcatgctacacatatattcactgacagaaacagatgttcaggaataaggt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)