Query= MSMg01no290_i04.b1 MSMg01no290_i04.b1 CHROMAT_FILE:
MSMg01no290_i04.b1 PHD_FILE: MSMg01no290_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:05 2005
(230 letters)
>mm_chr1_173399671_173400300
Length = 630
Score = 445 bits (230), Expect = e-129
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 tgtgttgtacatgcctgactccataatgagggcttttagctcagtttggtttaacttagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgttgtacatgcctgactccataatgagggcttttagctcagtttggtttaacttagc 260
Query: 61 tttgtttcttttctttttttttgagccagtatctctcactctagctcacagtagcccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtttcttttctttttttttgagccagtatctctcactctagctcacagtagcccgag 320
Query: 121 agtgctgagacaagaggcaggcaccaccacacccaggtattaaaaatagcattcatatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgctgagacaagaggcaggcaccaccacacccaggtattaaaaatagcattcatatga 380
Query: 181 ctaacaaaaacttccagacctcagaccactccgatagcctataaagtgct 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaacaaaaacttccagacctcagaccactccgatagcctataaagtgct 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space: 137241
Effective search space used: 137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no290_i04.g1 MSMg01no290_i04.g1 CHROMAT_FILE:
MSMg01no290_i04.g1 PHD_FILE: MSMg01no290_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:05 2005
(590 letters)
>mm_chr1_173457857_173458850
Length = 994
Score = 213 bits (110), Expect = 3e-59
Identities = 140/152 (92%), Gaps = 6/152 (3%)
Strand = Plus / Minus
Query: 1 attctccagaaaggatgtggaagcttttcagacaaggaggtccttgtcccggagggtgat 60
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 351 attctccagaaaggatgtggaagcttttctgacaaggaggtccctgtaatggagggtgat 292
Query: 61 gagt----acggacagagataagaaagggccggtctctgggaaatcctggatcctagtct 116
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gagtatggacggacagagataagaaagggccggtctctgggaaatcctggatcctagtct 232
Query: 117 cctttaagt-agtgtcagagattaggaaatgt 147
||||||||| | ||||| ||||||||||||||
Sbjct: 231 cctttaagtca-tgtcaaagattaggaaatgt 201
Score = 126 bits (65), Expect = 5e-33
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 506 aagattaggaaaggtagtactcacaggcgttagtgtgtattcagcatcgcttgctttgag 565
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 215 aagattaggaaatgtagtactcacaggcgttagtgtgtattcagcatagcttgctttgcg 156
Query: 566 catctagactgtaacagtacaggag 590
|||||||||||||||| || |||||
Sbjct: 155 catctagactgtaacaatataggag 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 590
Length of database: 994
Length adjustment: 10
Effective length of query: 580
Effective length of database: 984
Effective search space: 570720
Effective search space used: 570720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
