BAC Information

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BAC

Clone NameMSMg01-290K08
Chromosome1 (Build37)
Map Location 20,266,632 - 20,266,856
singlet/doubletsinglet
Overlap genePkhd1
Upstream geneLOC100040198, LOC226901
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K08.T7 (MSMg01no290_k08.b1)MSMg01-290K08.TJ (MSMg01no290_k08.g1)
ACCAG419866AG419867
length729741
length of high quality
(start - end)
226 (125 - 350)183 (135 - 317)
definitionCHROMAT_FILE: MSMg01no290_k08.b1 PHD_FILE: MSMg01no290_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:16 2005CHROMAT_FILE: MSMg01no290_k08.g1 PHD_FILE: MSMg01no290_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
AATATAGCAATTATCAATCTGGATGCGTGCTTTTATTTTTCCAGTATTTA
CTGACCATCTTTTTCCCCAACTTGGAAGTTTTGTTTTTTGTTTTGTTTTG
GTTGTTTTTATTATTCATTTGGGACTTCTACCAAATCAAGAACTCCTTTT
TTTTTTCTAAATCATTATTTATGGTTGTGAAATTAACTACTGATGAAAGA
GGTTCTCTTCACCCTGTCAAGGGGTAGCATTTTCTCTTGCCTTTTCGAGG
CAGTCTTCCTGGCCCCTACCTGAACTACTCATATCATACGGGAAAACAAC
TGTTTTAATATTCTCCCCCCCCCCCCCGGCAGGCAGATGTAGCTCATCAT
GGCAGGGTTCACAGTGTGATACAAAAAATCTCTTTAGGAAGTGGTTAGTG
ATCATCAATTCCATGATCGCGGTGCTAGTAACATGCTATTGATCAGGAAC
AGAATTATTAAGGAAACATTATCTATGCATACATTACCATCACAAGAAGT
GTCCAGTTCATGATCCTGCCATTCATGTATGCCTGAAGCTGTGAGAACAA
TATACTCTGACTCAGCCATTCCAAGAATGAGTCCGATTTAAGATTATCCT
CAAGATTATTGTTAGCTTTGCATATAGATTGCTCAAATCACATTGTTTAC
TGTCAGAAAGACTCTACCTGTTCAATGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTCTCCATCTATGGGAAT
TGAAAGTTTGGCTGGGTATATTTACCCCTGGGCTGGCATTTGTGTTCTCT
TAGATTCTGTATAACATCTGTCCAGGATATTGTGGCTTTCATACTCTCTG
ATGAAAAATCTGGTGTAATTCTAATAGGCCTGCCTTTATATGTTACTTGA
CCTTTTTCCCTTACTGCTTTTAATATTTTATCTTTATTTAGCATGTTTGT
TATTCTGATTATTACATGTCGGAAGGAATTTCTTTTCTGGTTCAGACTAT
TTGGAGTTCTGTATTCTTTTTGTATGCTCACACGCATCTCTTTTTTTAGG
ATTGGGAAGATTTCTTCTATAATTTTGTTGAAGATATTTGCTGGCCCTTT
AAGTTGAAAATCTTCATTCTCATCTACTCCTATTATCCTTAGGTTTGGTC
TTCTCATTGTGTCCTGGATATCCTGTATGTTTTGAGTTAGGATCTTTTTG
CATTTTGCATTTTCTTTGATTGTTGGGTATTCTGTTGCTTATGCTCGCAT
GTATGATTCCAGATCTTTCTTTTCAAGGGCTTCTATCTCCAGCGTTGCCT
CACTTTGCGCATTCCTTATCGTGGCTACTTCTCTTTTTAGGTCTAGTATG
GTTTTGTTCATTTCTACTCCCTGATTGGACGTGTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k08.b1 MSMg01no290_k08.b1 CHROMAT_FILE:
MSMg01no290_k08.b1 PHD_FILE: MSMg01no290_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:16 2005
         (226 letters)



>mm_chr1_20266432_20267056
          Length = 625

 Score =  391 bits (202), Expect = e-113
 Identities = 220/226 (97%), Gaps = 1/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagttttgttttttgttttgttttggttgtttttattattcatttgggacttctaccaa 60
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 425 gaagttttgttttttgttttgttttgtttgcttttattattcatttgggacttctaccaa 366

                                                                       
Query: 61  atcaagaactccttttttttttctaaatcattatttatggttgtgaaattaactactgat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 365 atcaagaactcc-tttttttttctaaatcattatttatggttgtgaaattaaccactaat 307

                                                                       
Query: 121 gaaagaggttctcttcaccctgtcaaggggtagcattttctcttgccttttcgaggcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaaagaggttctcttcaccctgtcaaggggtagcattttctcttgccttttcgaggcagt 247

                                                         
Query: 181 cttcctggcccctacctgaactactcatatcatacgggaaaacaac 226
           |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 cttcctggcccctacctgaactactcatatcataggggaaaacaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 625
Length adjustment: 9
Effective length of query: 217
Effective length of database: 616
Effective search space:   133672
Effective search space used:   133672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)