BAC Information

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BAC

Clone NameMSMg01-290K17
Chromosome1 (Build37)
Map Location 72,546,478 - 72,724,324
singlet/doubletdoublet
Overlap geneMarch4, Smarcal1, Ankar
Upstream geneAtic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5
Downstream geneRpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290K17.T7 (MSMg01no290_k17.b1)MSMg01-290K17.TJ (MSMg01no290_k17.g1)
ACCAG419884AG419885
length748755
length of high quality
(start - end)		664 (74 - 737)361 (389 - 749)
definitionCHROMAT_FILE: MSMg01no290_k17.b1 PHD_FILE: MSMg01no290_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005CHROMAT_FILE: MSMg01no290_k17.g1 PHD_FILE: MSMg01no290_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,723,939 - 72,724,324)(72,546,478 - 72,546,838)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAATATTAACCAAAAAAAAACCACACAAACCACAAGTACTTTAA
AGGCCCCATATTGGCAAGGGCAGACAGGGACTAGGTACTACTCCAGTGAA
GGAACATAGTACATCTGAGAGTACTCCACAGACGGAACATGATCTTATTT
TTCTCCTCCTTCAATCTTCTCTCAGGGTTCCTTATTAGCAGGAACTGGGC
AGAAGCTTATATGGCAGGTCTCTCAGATGTTTCAGCACGCATGCTTGCCT
ACAGCAAGCCTCTAGCAATTCATCAACTGCAGTCAGTCTTTCTTCTGCAG
GTCACGTCGGAAGTACTGCTTGATGGCACTGCTGATAGTCATGTTGCTCT
ACTTCTGGGCCACCTTACAACTTGGAGCATATTAGTTTGCTCTCTGGTGT
CACATCTGTGATGAATTCTGAAAGGCCTGTTAATTTTCTGTTGAGCTTTA
TATTTGTAATTAGAGCTGACTATCAGTTGTGACTTCTGATCATATACACC
TTACAAGAAACTGAAAAACAAAGCAAGAATTTTTAAATTTAGTATTCAAA
AAAATTTTTGGTCCATTTCTTTATTGTCCTTCAGTCTCTCTCTCTCTCTC
TCTCTTTCTCTCTCTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGACCTCCAATTCAG

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATGATCTTCGAGATGGGTAAAG
ATTCCCATATTGCATACAAACTGCATCCACCACATATGGGGTGGAGGGGA
GGGAAAGTTAAGGACTTTGAATCATTCAAATATTTAGATGAACAGGCGAG
TTTCTGAATAGAAGACATTTGTAAAAACATATATGTGACAAAAACAAAAA
CAAAAAAAACCAAACCTAAACCTAGAGTGTATAAAGAAGCCATGGAAGCC
TGCAGAGACAACATGGAGAGCGAACACGTTATGAAAGGAGATGGCCAAAA
GGCCAGTAACGTCACGTTTTTTTGCTCCCCTTACCTGACAGCTGAAAGAA
CAAATACAAAGCCACAGTGAGGTTCCAGGTAACCCCATCAGACGAGGGGA
AATTAAAACGCTCAAAGACGCCATGTGTTGGAGCAGCTGTGAAGCGCCCT
CACTGCTGATGGGGGTTAGAACTGGTTCACAGCCAGCCTCTGCTGAAGTT
CAGCGCACAGAACACCTGCCTGGGGAATCACTGGGCACATGAGTCAAAAT
GCTAACCTTCATCCCCCTGCTGTACTCGCTTCTCTCTGCTCTCAGATACT
TTCTTTTGACCCAATTTCCTTAAAATTGTCCACATTTTTTTTCTCACCTG
TTCTCCCTCAGGGTCATGACGGGAGCCTTCCTTCTATATTTAGCGGGTAT
GTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_k17.b1 MSMg01no290_k17.b1 CHROMAT_FILE:
MSMg01no290_k17.b1 PHD_FILE: MSMg01no290_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:17 2005
         (664 letters)



>mm_chr1_72723939_72725002
          Length = 1064

 Score =  716 bits (370), Expect = 0.0
 Identities = 382/386 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccacacaaaccacaagtactttaaaggccccatattggcaagggcagacagggacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 aaaccacacaaaccacaagtactttaaaggccccatattggcaagggcagagagggacta 327

                                                                       
Query: 61  ggtactactccagtgaaggaacatagtacatctgagagtactccacagacggaacatgat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 ggtactactccagtgaaggaacatagtacatctgagagtactccacagacggaatatgat 267

                                                                       
Query: 121 cttatttttctcctccttcaatcttctctcagggttccttattagcaggaactgggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttatttttctcctccttcaatcttctctcagggttccttattagcaggaactgggcaga 207

                                                                       
Query: 181 agcttatatggcaggtctctcagatgtttcagcacgcatgcttgcctacagcaagcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agcttatatggcaggtctctcagatgtttcagcacgcatgcttgcctacagcaagcctct 147

                                                                       
Query: 241 agcaattcatcaactgcagtcagtctttcttctgcaggtcacgtcggaagtactgcttga 300
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 146 agcaattcattaactgcagtcagtcttccttctgcaggtcacgtcggaagtactgcttga 87

                                                                       
Query: 301 tggcactgctgatagtcatgttgctctacttctgggccaccttacaacttggagcatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  tggcactgctgatagtcatgttgctctacttctgggccaccttacaacttggagcatatt 27

                                     
Query: 361 agtttgctctctggtgtcacatctgt 386
           ||||||||||||||||||||||||||
Sbjct: 26  agtttgctctctggtgtcacatctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_k17.g1 MSMg01no290_k17.g1 CHROMAT_FILE:
MSMg01no290_k17.g1 PHD_FILE: MSMg01no290_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:17 2005
         (361 letters)



>mm_chr1_72546278_72547038
          Length = 761

 Score =  690 bits (357), Expect = 0.0
 Identities = 360/361 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctgaaagaacaaatacaaagccacagtgaggttccaggtaaccccatcagacgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctgaaagaacaaatacaaagccacagtgaggttccaggtaaccccatcagacgaggg 260

                                                                       
Query: 61  gaaattaaaacgctcaaagacgccatgtgttggagcagctgtgaagcgccctcactgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaattaaaacgctcaaagacgccatgtgttggagcagctgtgaagcgccctcactgctg 320

                                                                       
Query: 121 atgggggttagaactggttcacagccagcctctgctgaagttcagcgcacagaacacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggggttagaactggttcacagccagcctctgctgaagttcagcgcacagaacacctg 380

                                                                       
Query: 181 cctggggaatcactgggcacatgagtcaaaatgctaaccttcatccccctgctgtactcg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggggaatcactgggcacgtgagtcaaaatgctaaccttcatccccctgctgtactcg 440

                                                                       
Query: 241 cttctctctgctctcagatactttcttttgacccaatttccttaaaattgtccacatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctctctgctctcagatactttcttttgacccaatttccttaaaattgtccacatttt 500

                                                                       
Query: 301 ttttctcacctgttctccctcagggtcatgacgggagccttccttctatatttagcgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctcacctgttctccctcagggtcatgacgggagccttccttctatatttagcgggt 560

            
Query: 361 a 361
           |
Sbjct: 561 a 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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