CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCGGCT
TCTGGCTATTATGAATAAGGCTGCTATGCACATAGTGGAGCATGTGTCCT
TCTTACTGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCT
GGATCCTCCAGTAGTACTATGTCCAATTTTCTAAGGAACCGCCAGACATT
ATGAACTAACCAGTACCCCAGAGCTCTTGAGTCTAGCTGCATATGTATCA
AAAGATGGCCTAGTTGGCCATCACTGTAAAGAGAGGCCCATTGGACACGC
AAACTTTATATGTCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAA
TGGGTGGGTAGGGGAGTGGGGGGAGGTTNNTNNTNNNNNNNTTNNNNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGGCTCNTNTCTTTTCT
CTCCGTTTCCTCTTTCCCCTTCCTCCTCTTTCCCCCCCCTTCTTTCCCTT
CCTTTTCTCCTCTTTTCTCTTGCTTCTCCCTTTTCCCTCTGTTCCCCCCG
TTCTTTTCTCCTCTTTTTCTCCCCTTGCTTTTCCCCCCTTCCTGCCCTTT
TTCTTCCCGTTCCTGTTTACGCTCCCCTGTTCT

TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTACTGTTGTCCTGTATAAA
TGCCACCATAACACCAGATATGAAGAGAGAGAGAGAGAAAGAGAGAGAGA
GAGAGAAGAGAAGTAGAAATAAAGAAAAAAAGAGAAGAGAAGAGAAGAGA
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGCTTTGGATGAG
AGTTATAATGGCTACCTCCAGAAATCATAACCTAGATGTCTCTGTGTCCC
ATCAGAAGAGAATAGTAATCTATAAAGAAACCTTTGGAGGGGGAAGATAA
ATGTACATTCTACCCAAAGATCTACTAACTGAAGGCAGACAGGAAAGGCT
TTTTGGAAAACACACAGATATCAAATTTACATAGCCCATATTGATGAATG
TTCTTTTCCTTTCTTCTAACTCTTACTAATGTTCTCTGTAAAAAAACAAA
AACAAAAACAAAAACAAAAACAAACAAACAAAAAAAAACCAAAACAAACA
TGTGGTAATGGGCTGGGGACTTAGCTCAGTGGTACAGCACTTGGCTAGCA
AGCTTAAGGCCCTGGGTTCAGTCCTCAGCTCTGGAAAAAAAATATGTGGT
GACATCTGAGATTCAAGCTGTTCTGTACATAAATCTN

Query= MSMg01no291_a02.g1 MSMg01no291_a02.g1 CHROMAT_FILE:
MSMg01no291_a02.g1 PHD_FILE: MSMg01no291_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
         (617 letters)



>mm_chr1_26686524_26687547
          Length = 1024

 Score =  663 bits (343), Expect = 0.0
 Identities = 544/661 (82%), Gaps = 94/661 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccactactgttgtcctg-tataaatgccaccataacaccagatatgaagagagagagag 59
           ||||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 918 tccactactcttgtcctgct-taaatgccaccataacaccagataggaagagagagagag 860

                                                                       
Query: 60  agaaagagagagagagagaga-agaga-agtagaaataaaga-aa-aaaagagaagagaa 115
           ||| ||||||||||||||||| ||||| || ||| | ||||| || | ||||||||||||
Sbjct: 859 agagagagagagagagagagagagagagag-agagagaaagagaagagaagagaagagaa 801

                                                                       
Query: 116 gagaag---------agaagagaagagaagagaagagaaga------ga----a---ga- 152
           ||||||         |||| |||||||||||||||||||||      ||    |   || 
Sbjct: 800 gagaagaagaaataaagaaaagaagagaagagaagagaagaggaggggaggggaggggag 741

                                                                       
Query: 153 --ga----a---gagaagagaagagaagagaagagaagagaagagaagagaagagaagag 203
             ||    |   ||| |||| |||| |||| |||| |||| |||| ||||||||||  ||
Sbjct: 740 gggaggggaggggaggagaggagaggagaggagaggagaggagaggagagaagaga--ag 683

                                                                       
Query: 204 aagagaagagctttggatgagagttataatggctacctcc---agaaatcataacctaga 260
           |||||||||||||||| |||||||||||||||| ||||||   |||||||||||||||||
Sbjct: 682 aagagaagagctttggttgagagttataatggccacctccagaagaaatcataacctaga 623

                                                                       
Query: 261 tgtctctgtgtcccatcagaagagaatagtaatctataaagaaacctttggagggggaag 320
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 622 tgtctctgtgtcccatcagaagagaatcgtaatatataaagaaacctttggagggggaag 563

                                                                       
Query: 321 ataaatgtacattctacccaaagatctactaactgaaggcagacaggaaaggctttttgg 380
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 562 ataaatgtacattctacccaaagatctactcactgaaggcagacaggaaaggcttttttg 503

                                                                       
Query: 381 aaaacacacagatatcaaatttacatagcccatattgatgaatg----ttcttttccttt 436
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 502 aaaacacacagatatcaaatttacatagcccatattgatgaatgttccttcttttccttt 443

                                                                       
Query: 437 cttctaactcttactaatgttctctgtaaaaaaacaaaaacaaaaacaaaaacaaaaaca 496
           ||||||||||||||||||||||||||||||||                            
Sbjct: 442 cttctaactcttactaatgttctctgtaaaaa---------------------------- 411

                                                                       
Query: 497 aacaaacaaaaaaaaaccaaaacaaacatgtggtaatgggctggggacttagctcagtgg 556
                  |||||||||           ||||||| |||||||| ||||||||||||||||
Sbjct: 410 -------aaaaaaaaa-----------atgtggtgatgggctgtggacttagctcagtgg 369

                                                                       
Query: 557 tacagcacttggctagcaagcttaaggccctgggttcagtcctcagctctggaaaaaaaa 616
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 tacagcacttggctagcaagcttaaggccctgggttcagccctcagctctggaaaaaaaa 309

            
Query: 617 t 617
           |
Sbjct: 308 t 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1024
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1014
Effective search space:   615498
Effective search space used:   615498
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)