BAC Information

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BAC

Clone NameMSMg01-291C18
Chromosome1 (Build37)
Map Location 93,977,632 - 94,125,457
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C18.T7 (MSMg01no291_c18.b1)MSMg01-291C18.TJ (MSMg01no291_c18.g1)
ACCAG420246AG420247
length754752
length of high quality
(start - end)
318 (428 - 745)304 (376 - 679)
definitionCHROMAT_FILE: MSMg01no291_c18.b1 PHD_FILE: MSMg01no291_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:53 2005CHROMAT_FILE: MSMg01no291_c18.g1 PHD_FILE: MSMg01no291_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,125,140 - 94,125,457)(93,977,632 - 93,977,935)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
ACCCCTCTTGGTTGGGAGAGATTCTCCTTGTGGAACTAAAAACAGGCCTG
CATGCCCAGTTTTACCACGATACCACACGACATACTCTCTCAGACCCACT
TCCTTCCTCTTCATCCCTGGAGAGCCTAATACCTGTCCACACCCAGGAAA
CTTCGGTGAGCCTCCCTGGTTTTCCCCTCAGTTCTGGGATTTCATGGCTT
ATGACTGGTTTGTGGTACATTCCACACTGTTTTCTTCATCCACCCTCTTC
CAGCACAGAGCACTTCCTCAAGACAGACAGCCTTCTCCACAACTGGGAGC
ATTGTTGCTTGCCCCACCCCACCACATCAAACCATGCATCATCGGACTTG
AGCTTCCACCCCGGGATCTTAAAGATTCTCCTAAACCTAGAGATATTGTG
GAACCTTGTGGCTCTGGGGTAGGGAGTAGGCTGCCCTTTGGAAGGCACGT
GGATACCCATAACAATCTCCTATGGTTCTGATACAGCTCACCCTGTGCTA
GGTCTCACACACACCATACACATATATACATGACACGTGTATATGTATAC
ATACACACAAACACATACTAGGAACACTACACATAACACACATATGTACA
TACTTACGTAATACATATACATATACACACACATACACATACCAGACACA
CACCTTCACACTGTCTGTCCTTACAACATACTCATATATGCCCTGCATAA
TCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGCATAACTAACTTTCTTTAACTCTGGTCT
AAATTCAGTTGTTGGACCCTTACTAAAAGAATCAGGAATGATTTTGAAGG
CGAGTGATGTTCAGTTGTGACTTTTATTGCTCAGCTCTTCCTTGGAATCT
AACAAGAGTGAGTGCAGAGACGGAGAAAGCCTAAGGATGAACACTCGGAA
AAGCAGTGTCCACGCTGTGCCTCCAATGGAGCCAGCCAACCAAGAGCTAG
GGTGATTAGGAAGGACAGGCTTTCTCAAGGGTACCTTGTGACTGAAAAGG
GTAATTTTTTTTCAGCCCACCCGAAGGGTGAGGAGAGTCATCAAGAGAGG
ACACAACCCCCTTGCCCCATCCAGTTCTGAACTAGCAAATGAGGGAACCA
GAACCTCCTCTTTGTTCACTGTCCCCAGCCATCCCACAGTCACTCTAGGT
TTGTGTTGACAAGCCCCTGCCCTCAGAAGGACCAAGAGGTAAGCAGAGGG
AGATGGTCAGAAAGTGAACATGGAAGTGGCTTACCTTGCCTGTCAAAAAA
GAGGGTCTGATACTCCTCCATATCAGAATGACCTTTTCAGCCTTTTAATC
CATGCTTAACCAAGAGCAGTAAGACCAAGGAAGACCAGGGGGAAGATTCT
AGGAAGAAGGTGGGGCCTTTTATATGGGCTACCCTGGGGCTCTTGCGCCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c18.b1 MSMg01no291_c18.b1 CHROMAT_FILE:
MSMg01no291_c18.b1 PHD_FILE: MSMg01no291_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:53 2005
         (318 letters)



>mm_chr1_94125121_94125838
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctaaacctagagatattgtggaaccttgtggctctggggtagggagtaggctgccct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctcctaaacctaaagatattgtggaaccttgtggctctggggtagggagtaggctgccct 278

                                                                       
Query: 61  ttggaaggcacgtggatacccataacaatctcctatggttctgatacagctcaccctgtg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgggaggcacgtggatacccataacaatctcctatggttctgatacagctcaccctgtg 218

                                                                       
Query: 121 ctaggtctcacacacaccatacacatatatacatgacacgtgtatatgtatacatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ctaggtctcacacacaccatacacatatatacatgacacgtgtatatgtatacatacaca 158

                                                                       
Query: 181 caaacacatactaggaacactacacataacacacatatgtacatacttacgtaatacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caaacacatactaggaacactacacataacacacatatgtacatacttacgtaatacata 98

                                                                       
Query: 241 tacatatacacacacatacacataccagacacacaccttcacactgtctgtccttacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tacatatacacacacatacacataccagacacacaccttcacactgtctgtccttacaac 38

                             
Query: 301 atactcatatatgccctg 318
           ||||||||||||||||||
Sbjct: 37  atactcatatatgccctg 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_c18.g1 MSMg01no291_c18.g1 CHROMAT_FILE:
MSMg01no291_c18.g1 PHD_FILE: MSMg01no291_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:54 2005
         (304 letters)



>mm_chr1_93977432_93978135
          Length = 704

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgaggagagtcatcaagagaggacacaacccccttgccccatccagttctgaactag 60
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 201 gggtaaggagagtcatcaagagaggacacatcccccttgccccatccagttctgaactac 260

                                                                       
Query: 61  caaatgagggaaccagaacctcctctttgttcactgtccccagccatcccacagtcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatgagggaaccagaacctcctctttgttcactgtccccagccatcccacagtcactc 320

                                                                       
Query: 121 taggtttgtgttgacaagcccctgccctcagaaggaccaagaggtaagcagagggagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtttgtgttgacaagcccctgccctcagaaggaccaagaggtaagcagagggagatg 380

                                                                       
Query: 181 gtcagaaagtgaacatggaagtggcttaccttgcctgtcaaaaaagagggtctgatactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagaaagtgaacatggaagtggcttaccttgcctgtcaaaaaagagggtctgatactc 440

                                                                       
Query: 241 ctccatatcagaatgaccttttcagccttttaatccatgcttaaccaagagcagtaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccatatcagaatgaccttttcagccttttaatccatgcttaaccaagagcagtaagac 500

               
Query: 301 caag 304
           ||||
Sbjct: 501 caag 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)