BAC Information

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BAC

Clone NameMSMg01-291D13
Chromosome1 (Build37)
Map Location 167,373,539 - 167,373,964
singlet/doubletsinglet
Overlap geneIqwd1
Upstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161
Downstream geneBrp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291D13.T7 (MSMg01no291_d13.b1)MSMg01-291D13.TJ (MSMg01no291_d13.g1)
ACCAG420281AG420282
length728742
length of high quality
(start - end)
239 (117 - 355)506 (75 - 580)
definitionCHROMAT_FILE: MSMg01no291_d13.b1 PHD_FILE: MSMg01no291_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:57 2005CHROMAT_FILE: MSMg01no291_d13.g1 PHD_FILE: MSMg01no291_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCAAGAGAACCGCGGAATTCCTGATCT
TTCAAAAATTTTTATCATGAATGGGTGTTAGATTTTGTCAAATGCTTTCT
CAGCTTTTACCCAGATGATCATGTGTTTTTTGTCTTTGAGGTTGTTTATA
TAATGGATTACGTTGAAGGATTTCCGTATATTAAACCATCCCTGCATCCC
TGGAATGAAACCTACTTGGACAGGATGGATGATTGTTTTGATGTGTTCTT
GGATTCAGTTAGCGAGAATTTTATTGAGTATTTTTGCATCAATATTCATA
AGGGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGATTT
AGGTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGTAGAGTACCTT
CCACCCCCCCCTTGTGGAACAGTTTGTGAAGAACTGGAATTAGATCTTCT
TTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTT
ATTGGTTGAGAGACAATTAATGACTATTTCTATTTCTTTAGGGGATATAG
GACTGTTTAGATCATTAACCTGATCTGATTTAACTTTGTTACCTGGTATC
TGTCTAGAACTTTGTCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTAT
AGCCTTTTGTAGAAGGATCTGATGGTGTCTTGGATTTCTTCAGGAACTGT
TGATATGTCTCCCTTTTCATTTCTGATT
CGAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTCAGAAAATCATTTATATGTGTACATTTAGTTCCA
TGCAGTGTAGTCTAATATTTATTCCGACAAATTAATGTTAATTTTAGTTT
ACTAATTATGGATTTATGTGGTTAAAACATAAAATTCCACCACATGGATT
GTTTGTGCCACCTTTTTCTTTACTGCTATAACCCTGACAACCACAATTCT
GTTCTTAACACAGGGTTTTGTCACTTCAGAGATGTCATATATTGGTTATT
GTGGCATATGACTATATTCTAAACTATAAGAATAAGCAGCTGGAATATTT
AAGTCCATAAGTTTGATACCAACCTGGACAAATACACACCTGTCTCATAT
ACTCCTGTGTTATATACACCCCCAATGTGTGTAACCTTATAAATGATGAT
ATTTACTATTTCAGATTAGATTTTTATTTGGCATAATTGTCTTGAAATAC
ATCTAAATTATGTACATCAATAATTTATTCCTTTTTATTGTTGAGTATAA
ATGTTTATCTGTTCATCTGTTTTTAGATAGTTCAGTTGTTTCTAATTTGG
GGTTAAGAATCAGGCTATTTGAGTCACACCTTTGATGCCGGCACTTGTGA
GGCAGAGGTAGGAGCATCTGTCCAGTTTGAGGCCAGCGTGATCCCCAAAG
TGAGTTTTAGTGTAGTCAGAGCCTACACCGTGAGACCCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_d13.g1 MSMg01no291_d13.g1 CHROMAT_FILE:
MSMg01no291_d13.g1 PHD_FILE: MSMg01no291_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:57 2005
         (506 letters)



>mm_chr1_167373539_167374444
          Length = 906

 Score =  758 bits (392), Expect = 0.0
 Identities = 416/426 (97%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttatatgtgtacatttagttccatgcagtgtagtctaatatttattccgacaaatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 426 catttatatgtgtacatttagttccatgcagtgtagtctaatatttattttgacaaatta 367

                                                                       
Query: 61  atgttaattttagtttactaattatggatttatgtggttaaaacataaaattccaccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgttaattttagtttactaattatggatttatgtggttaaaacataaaattccaccaca 307

                                                                       
Query: 121 tggattgtttgtgccacctttttctttactgctataaccctgacaaccacaattctgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggattgtttgtgccacctttttctttactgctataaccctgacaaccacaattctgttc 247

                                                                       
Query: 181 ttaacacagggttttgtcacttcagagatgtcatatattggttattgtggcatatgacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaacacagggttttgtcacttcagagatgtcatatattggttattgtggcatatgacta 187

                                                                       
Query: 241 tattctaaactat----aagaataagcagctggaatatttaagtccataagtttgatacc 296
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tattctaaactatctagaagaataagcagctggaatatttaagtccataagtttgatacc 127

                                                                       
Query: 297 aacctggacaaatacacacctgtctcatatactcctgtgttatatacacccccaatgtgt 356
           |||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||
Sbjct: 126 aacctggacaaatacacacctgtctcatatactcctgtgttatatagacacataatgtgt 67

                                                                       
Query: 357 gtaaccttataaatgatgatatttactatttcagattagatttttatttggcataattgt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gtaaccttataaatgatgatatttactatttcagattagatttttatttggcataattgt 7

                 
Query: 417 cttgaa 422
           ||||||
Sbjct: 6   cttgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)