BAC Information

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BAC

Clone NameMSMg01-291O05
Chromosome1 (Build37)
Map Location 53,489,778 - 53,490,118
singlet/doubletsinglet
Overlap geneLOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291O05.T7 (MSMg01no291_o05.b1)MSMg01-291O05.TJ (MSMg01no291_o05.g1)
ACCAG420761AG420762
length740753
length of high quality
(start - end)
342 (71 - 412)291 (436 - 726)
definitionCHROMAT_FILE: MSMg01no291_o05.b1 PHD_FILE: MSMg01no291_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:47 2005CHROMAT_FILE: MSMg01no291_o05.g1 PHD_FILE: MSMg01no291_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGTCTTCCATGGGGTCCATGAGGTATGATCGGATGATATTAGCC
CGCAATCCTTTTGGTGCTTCCCTGGTCATTTTTACTCCATTCTGCAGGAC
CGACACGGGGAAATTTGGAGATGGGTAACTCGTCAGCCAGATTCGGAAAT
CAGGGTGTGTTGATTCTGCGCTTAACTCCTGTGAGAAAACAAATCACAAA
CAAGTGTGAGTAAGACTCAAGGAATCATCTCCATGTCTGTAAGGAACAGT
CTGGAAAGGGAAAGAAACATCTCTAAACAGAGATGGAATTGTTGCAACTT
AAGCAGAAGCCCAACATTCCTTGCTGAGTCACCATGCTTCACTGAGAAGG
CCCAGAGTGTTCCCACCCCACCGACAAAATTAATTCACATAATTGTACAG
CTTACACAAGTGCTATGTAGTTCAGCATTGGCTCAAAGACTAAAGTCTTC
TTAATGGGTTTCATGCCTGTACTGATGTTTCTGAAATATTTCAAAAATAA
TTCTTGACCCACAGCTAGATTAAGACTAACGCCCTCCTCTTGCTGCAGCC
AGATTTGGGAATTAAGTGGCCACTGAAGACTAATCAATATCACTCCAAGC
TGGAATTATTTGTTTAAGAGAGAAGGGTGTTTTAAAGGGCAAGAGCTAGT
GTATCCTGAAGCCTCAGTATTTATCACTACTACCTCTACG
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCTAAAAAATTCAATATTAGAATGGCTACTCCAACTTGT
TTCTTCAGACCATTTTTTTTCANAAAAAGAATTCCAGCCTTTCACTCTGA
GGTAGTGTCTGTCTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCAAAAT
GTTGGGTCTTGTTTGTGTAGCCAGTCTGTTAGTCTATTTCTTTTTATTGG
GGAATTGAGTCTATTGATATTAAGAGATATTAAGGAAAAGTAATTGTTGC
TTCCTTTTATTGTTGTTAGAGTTGGCATTCTGTTCTTGTGGCTGTCTTCT
TTTTGGTTTGTTTTATTTTTTCCCCCCCCCCTTTTTCTAGGGCGTGATTT
CCGTCCTTGTATCGCCCCCCCCCAGCTAAAATCATTTGAAGGGCTGGATT
TGTAGAAAGATAATGTGTGAGTTTGGTTTTGTCGTGGAATACTTTGATTT
CTCCATCTATGGTAATTGAGAGTTTGGCCGGGTCTAGTAGCCTGTGCTGG
CATTTGTTTTCTCTTAGTGTCCTAACATCTGTCCAGGCTCTTCTTGCTTT
CATAGTCTCTGATAGGCCTGCCTTTATATGTTAATTGACCTTTCTCCCTT
ACTGCTTTTAATATTCTCTCTTTATTTAGTGCATTTGTTTTTCTGACTAT
TATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGATCTGT
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_o05.b1 MSMg01no291_o05.b1 CHROMAT_FILE:
MSMg01no291_o05.b1 PHD_FILE: MSMg01no291_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:47 2005
         (342 letters)



>mm_chr1_53489578_53490319
          Length = 742

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgaggtatgatcggatgatattagcccgcaatccttttggtgcttccctggtcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tccatgaggtatgatcggatgatattagcccgcaatccttttggtgcttcgttggtcatt 260

                                                                       
Query: 61  tttactccattctgcaggaccgacacggggaaatttggagatgggtaactcgtcagccag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttactccattctgcaggactgacacggggaaatttggagatgggtaactcgtcagccag 320

                                                                       
Query: 121 attcggaaatcagggtgtgttgattctgcgcttaactcctgtgagaaaacaaatcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcggaaatcagggtgtgttgattctgcgcttaactcctgtgagaaaacaaatcacaaa 380

                                                                       
Query: 181 caagtgtgagtaagactcaaggaatcatctccatgtctgtaaggaacagtctggaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgtgagtaagactcaaggaatcatctccatgtctgtaaggaacagtctggaaaggg 440

                                                                       
Query: 241 aaagaaacatctctaaacagagatggaattgttgcaacttaagcagaagcccaacattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaacatctctaaacagagatggaattgttgcaacttaagcagaagcccaacattcc 500

                                                    
Query: 301 ttgctgagtcaccatgcttcactgagaaggcccagagtgtt 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctgagtcaccatgcttcactgagaaggcccagagtgtt 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)