BAC Information

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BAC

Clone NameMSMg01-291P16
Chromosome1 (Build37)
Map Location 34,515,879 - 34,516,162
singlet/doubletsinglet
Overlap genenone
Upstream genePrim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4
Downstream genePtpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P16.T7 (MSMg01no291_p16.b1)MSMg01-291P16.TJ (MSMg01no291_p16.g1)
ACCAG420828AG420829
length737736
length of high quality
(start - end)
316 (45 - 360)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no291_p16.b1 PHD_FILE: MSMg01no291_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005CHROMAT_FILE: MSMg01no291_p16.g1 PHD_FILE: MSMg01no291_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCCCAGGTGGTTCTCCTTAGACATTCTGTGTTTGCATTCCTCTG
TTTTATGTTAAGAATCCAGTACCCTCTTTGTACCTTGCTGGTATGTCACC
CAACTTCCTTATTGTCTTCTGTATAAAAAGTCTGATGCTCGATTTGACAA
AATACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCAAT
TCATCCAACGCTTTGCCCACCCGCAACTAGAGACCCATTCCACGCAGACA
AAGGGACCCAGAGGGTCTGCGGCATTCATGGACTTTCTGAAGCTATTTGG
CATTGTCTATTTTCTTGTTCCCCCCCCCGCCAAATTGAATGTTCCAATCT
TGTAGACAAAGGACACCCCACACAAATAAAGAACACCACTCTTCTCTGAG
AAATTGTCTCATACTCCTTTTCAACCCCCATCCTCCTCCTCCCCTTCATC
CTCTCTTCCCTGTTTTGATCCTCCTCCCCCTTTTTCCTCCTCCTCCTCCC
CTTCATCCTCTCTTCCCTGTTTTGATCCTCCTCCCCCTTTTTCCTTCTCC
TCCTCCTCCTCCGACTCCCCTGTGGGAAGCCACATACATCATTACAAGGT
GGCGTGTGCTACTGCTGGCCACCACCCATAAGTTTGTGTAAACAACCAAT
GTGCGCATGTGCAGTATAAGTTTTTGCCAAGTCACTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAATGTAAGCTAGGGTGACCTTGAC
TTTCTGATTTTCTTGCCTCCACCTTGTGAATGCTGGGACAGGCACTCTAC
GAATTCAGCTACAAACCTTAGCACGGCTCTTCTCCAGTCTTTAGTCTCCA
GGACCCCAGGAGCTTCAGCATAAGATCTTCTTCAAACTCCTGAAGGGGGA
CGGAGTGAGTGTTGAGACCACTTTTCCTCCCAATGCCTCTCTAGTCTCTT
CCTCCCTGAGGGGTATGGGTTAAGATCCACAAGTTAGGACTGAATCCTGG
TGTCCCCGTTTTTCTCTGCACCCCCCCCCCCGAAATCACACCCCCTACCC
TCAGAAATAGGCCTCCCCCCACAACAAAGAGAAGGGAATATATTTATTCG
AAGTCCTCGACCTCTCTCATATTCCGCTGTCGCACGACTGTGAACCTCAG
CGCTCGCAGGACTCCGGAGCAACCTTGGGAACCCGGCCTGCGAGATTGAG
AGCGCAGCCATCCCCCTGGAAAGGCCAATGGGACTGAGCGTTCTGTGCGG
ACTCCACCAGCTTCACGGCAGCCAAAGCACCCGAGGCGCCAGTGGGGAAT
TGCGGGACCCGCAGCTACTTGGACGGCCAGTTCGGCTGCGGTGGCAGCCA
GCACCTATGGGCGGGACGAACGGAGTGAACTCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p16.g1 MSMg01no291_p16.g1 CHROMAT_FILE:
MSMg01no291_p16.g1 PHD_FILE: MSMg01no291_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:54 2005
         (287 letters)



>mm_chr1_34515679_34516365
          Length = 687

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatgtaagctagggtgaccttgactttctgattttcttgcctccaccttgtgaatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatgtaagctagggtgaccttgactttctgattttcttgcctccaccttgtgaatgct 260

                                                                       
Query: 61  gggacaggcactctacgaattcagctacaaaccttagcacggctcttctccagtctttag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacaggcactctaccaattcagctacaaaccttagcacggctcttctccagtctttag 320

                                                                       
Query: 121 tctccaggaccccaggagcttcagcataagatcttcttcaaactcctgaagggggacgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccaggaccccaggagcttcagcataagatcttcttcaaactcctgaagggggacgga 380

                                                                       
Query: 181 gtgagtgttgagaccacttttcctcccaatgcctctctagtctcttcctccctgaggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagtgttgagaccacttttcctcccaatgcctctctagtctcttcctccctgaggggt 440

                                                       
Query: 241 atgggttaagatccacaagttaggactgaatcctggtgtccccg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggttaagatccacaagttaggactgaatcctggtgtccccg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)