BAC Information

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BAC

Clone NameMSMg01-291P17
Chromosome1 (Build37)
Map Location 95,064,542 - 95,064,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik
Downstream geneE030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P17.T7 (MSMg01no291_p17.b1)MSMg01-291P17.TJ (MSMg01no291_p17.g1)
ACCAG420830AG420831
length734733
length of high quality
(start - end)
285 (121 - 405)264 (438 - 701)
definitionCHROMAT_FILE: MSMg01no291_p17.b1 PHD_FILE: MSMg01no291_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005CHROMAT_FILE: MSMg01no291_p17.g1 PHD_FILE: MSMg01no291_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGATCCGCGGAATTCACAG
GTATATCGATGGAACTAGAAAAAAATTATCCTGAGTGAGGTAAATGACAA
ATTTGTCTTTGTCCCTGCTTAAGTGTGGATACTAGCTGTAAAGTCGATAG
TAGCCAAGCTATAATCTATAGAACCACAGAGGATAAGTACAGAGAAAGGA
CTAGGAGATACAAATGGATCCATTAGGAAAGAGAAGTGGAATAGATAGTT
ATGGGTGAATGGGAGTGCTGGTCTTTGCTTAAGTGTGGATACTAGCTGTA
AAGTCGATAGTATTCTAGCTATAATCTATAGAACCACAGAGGATAAGTAC
AGAGAAAGGACTAGGAGATACAAATGGATCCATTAGGAAAGAGAAGTGGA
ATAGACCACCACCCCCGAATGGGAGTGCTGGAGGGAATATAGGGAGAGAC
AGAGAAGTCTGAGGGCTAGTGTGGAAACCTATCTCAGAATAACCTTTTAT
TATATCTATATTACCACTACCTGAATGGAATCCCACATTGAGAGAGACAG
AGTCTCTATAGGGCATCTCTGGTCACTTCACCACTTTCAGCTGTCATTTT
CGCTTTCCGTACTATTTCTGTTTGTACTCGTCGACCCAAGAAATCCACCG
CTCCCCCTCTTCATCCCCTTCCGCTGTTTGCCCGCCTTTATGGTTGTTCT
CCTACTAACTGTATTTCATGGGCTCTTTTATTTT
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGCTCCTGAGCACCCAGATGC
CCCACCTTGATTGTGGAGTCCAACACCCAAACAAGCCCATGAGTGTTGCT
GTGGCAACCAGGACGCTGAGTGCCCAGGTTTCCCTGGAAATAGGAGTAAG
GGCTTGCTGTGAGAGCTAAGGAACACTGTTGCCTGAAGCGGTTTCCCCGG
AGACCTGGAGTGAAGCTGACCGGAGGGAGGGACCAGCGTCTTCCTAGAGC
CCCCGTTTACTGTTTAGGGAGACTTGTTTGCTTGCTGATCACACCCAGGG
GTGCAGACCTCTTTTTCTTTCCCCCCCCCCCCTGACTTAGTTCATGTGCC
AAAGAACTTTGTGACCCCCCCCCAAAAGAAAAGACACAGATGTCTAAGGA
TTAGGGAGGGACAGAGCTTCCCCAGGAACAAAGGTCTTCCTTTGTAGCAA
AGGTTTCCTCTTGGAGCCTGGCAGGTTACCTGCTCTGCAGTGCCCTACTT
AGACACATAGAGAATGCATCCTTCCCCAGTTACCCTGTTGGTACTAATCT
GGTACTAAACTTACCAATACAGACGCTCAACCTACTTCTGAGACCTTCTG
AACTCTGCTGCCATCTCTGCGCAGTCACTCTGTAATCCATGCATATGCAT
ACAGATAGAGAGATAGATTCGCTGTGTGCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p17.g1 MSMg01no291_p17.g1 CHROMAT_FILE:
MSMg01no291_p17.g1 PHD_FILE: MSMg01no291_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:54 2005
         (264 letters)



>mm_chr1_95064342_95065005
          Length = 664

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtctaaggattagggagggacagagcttccccaggaacaaaggtcttcctttgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agatgtctaaggattagggagggacagagcttccccaggaacaaaggtcttcctttgtag 405

                                                                       
Query: 61  caaaggtttcctcttggagcctggcaggttacctgctctgcagtgccctacttagacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caaaggtttcctcttggagcctggcaggttacctgctctgcagtgccctacttagacaca 345

                                                                       
Query: 121 tagagaatgcatccttccccagttaccctgttggtactaatctggtactaaacttaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagagaatgcatccttccccagttaccctgttggtactaatctggtactaaacttaccaa 285

                                                                       
Query: 181 tacagacgctcaacctacttctgagaccttctgaactctgctgccatctctgcgcagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 284 tacagacgctcaacctacttctgagaccttctgaactctgctgccatttctgcgcagtca 225

                                   
Query: 241 ctctgtaatccatgcatatgcata 264
           ||||||||||||||||||||||||
Sbjct: 224 ctctgtaatccatgcatatgcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)