BAC Information

Click to search

BAC

Clone NameMSMg01-292A09
Chromosome1 (Build37)
Map Location 91,453,704 - 91,629,113
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292A09.T7 (MSMg01no292_a09.b1)MSMg01-292A09.TJ (MSMg01no292_a09.g1)
ACCAG420860AG420861
length751793
length of high quality
(start - end)		297 (73 - 369)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no292_a09.b1 PHD_FILE: MSMg01no292_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:57 2005CHROMAT_FILE: MSMg01no292_a09.g1 PHD_FILE: MSMg01no292_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,628,817 - 91,629,113)(91,453,704 - 91,453,986)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAAAATCCGCGGA
ATTCTTCCCCTTAGCAATCAGGAACTCAAGCCCTGAAGACTTAAGGACAG
GCAAAGCGGCACAGAGTCCCACCCATCCACCCACATGCATGCATCCAACC
ATCCATCCCCCTCCCCACCGCCACCTGCTCCCTCAGCCCTCCATCCCCCC
ACTACCTGCTCACCTGCACCTACCTGTCCTATGTCCTACCAGCAAACCTT
TTCCTTCCCCGCTTACCTGTCCTCTACCCAACTGTCCATCCCATGAACCC
ACCTCTCACCACACCTTCTCTTTTCACTCTATACAGTCATCCACCCAACC
AGGATGCCACCCTCATGGCAGCACAGAGCTGGTGTGGAACTATGATATCA
GAAGGACAAGGAACACCCATATGAGACTCCCGGAGAGAGAAAAAGCCAAC
ACAAGAATGGCATTCTTCTGTGGAGAGACAGCAAGCTGCAGAGAACTTAC
AGCAGGGTGCTGTTACGCTGAGGAAACCAGGCAGAAATGGGGCCTGTAAG
TGCCTTCCGACATGTTCATGTTAGAACAGGCTTGTTTGGCTCACAATTTA
TTCTGGGCCTGGGGTCATGGTTGCACACCATGGTTGAACCATGTGGCAAG
GATAATTTTTTTTGTATGCCGCTTCAAAATATTAAAAACCCTTAAAAAAA
AGCTGACCCCAATGTTAACCTTTTATGCTTATTCTTATTCTTAATCCCTT
G

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTTTTAGTGTGTCATGAGTGT
GTTTTAGGGACGCATGGGGTTAGAAAATGAATGTCTCCACCCACCCCACC
CCCCTTTTTGGGTAGAATGCCTTCCTAGCATTCCTGGGAATAACTCAAGC
TGCACTTTGGTAAATGTCAAAAAGTTGGAAGTTCAGGGCAGTGTATGTCG
GCCTGTCTGTGTCTGCCAGCTGTTTTCCTGGCCCCGGGCTTCTGTCTTTC
TCTAAAACTTTACTTTGTCTTTGTATTACTTACAGGGACAGCACCTCCTC
AGTTTGGGGTGTTTTTTTTTTCCCCCCCCCCCCCCCAGGGTATTGTTGTG
TGTNATTGTTTTTTTCCCCCCCCCCACAAAAAAAAAAAAAGTAGGGGGGG
GGGGGGGGTTATTCTCACCCCTGCCGGTTTAATTATTCCTCTTTGTTGAA
TATATTTATTACGCTCCCTGAATATTTTCTCCTCCACCCTTTTTGCCTCT
TCTGTTTATTTAACTTCTTAATACAACGCATATCTATTCTTACTTCCTTT
CTCCATTTTTTTTCACCATTTTTTTATTTTCCACCCCTTCACCACCACTA
ACACACTTCGATATTTTTTGATTATCTTATTTTTCTTCTCTTTCACTATT
TCCTTCTCCACCATTTAACTTATTATATTTTTTCATATTTCCCACTATCT
TTGCCCCCTTTCTTTTTCCACCGTCTTTTTATTCTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_a09.b1 MSMg01no292_a09.b1 CHROMAT_FILE:
MSMg01no292_a09.b1 PHD_FILE: MSMg01no292_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:57 2005
         (297 letters)



>mm_chr1_91628460_91629156
          Length = 697

 Score =  520 bits (269), Expect = e-152
 Identities = 290/297 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcaagccctgaagacttaaggacaggcaaagcggcacagagtcccacccatccaccc 60
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 654 aactcaagccctgaagacttaagggcaggcaaagcagcacagagtcccacccatccaccc 595

                                                                       
Query: 61  acatgcatgcatccaaccatccatccccctccccaccgccacctgctccctcagccctcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 acatgcatgcatccaaccgtccatccccctccccaccgccacctgctccctcagccctcc 535

                                                                       
Query: 121 atccccccactacctgctcacctgcacctacctgtcctatgtcctaccagcaaacctttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 534 atccccccactacctgctcacctgcacctacctgtcctatgtcctaccagcaaaccttct 475

                                                                       
Query: 181 ccttccccgcttacctgtcctctacccaactgtccatcccatgaacccacctctcaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccttccccgcttacctgtcctctacccaactgtccatcccatgaacccacctctcaccac 415

                                                                    
Query: 241 accttctcttttcactctatacagtcatccacccaaccaggatgccaccctcatggc 297
           ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 accttctccatccactctatacagtcatccacccaaccaggatgccaccctcatggc 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_a09.g1 MSMg01no292_a09.g1 CHROMAT_FILE:
MSMg01no292_a09.g1 PHD_FILE: MSMg01no292_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:58 2005
         (286 letters)



>mm_chr1_91453504_91454189
          Length = 686

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtttttagtgtgtcatgagtgtgttttagggacgcatggggttagaaaatgaatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtttttagtgtgtcatgagtgtgttttagggacgcatggggttagaaaatgaatgtct 260

                                                                       
Query: 61  ccacccaccccacccccctttttgggtagaatgccttcctagcattcctgggaataactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacccaccccacccccctttttgggtagaatgccttcctagcattcctgggaataactc 320

                                                                       
Query: 121 aagctgcactttggtaaatgtcaaaaagttggaagttcagggcagtgtatgtcggcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctgcactttggtaaatgtcaaaaagttggaagttcagggcagtgtatgtcggcctgt 380

                                                                       
Query: 181 ctgtgtctgccagctgttttcctggccccgggcttctgtctttctctaaaactttacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtctgccagctgttttcctggccccgggcttctgtctttctctaaaactttacttt 440

                                                      
Query: 241 gtctttgtattacttacagggacagcacctcctcagtttgggg 283
           ||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 441 gtctttggagtacttacagggacagcacctcctcagtttgggg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |