BAC Information

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BAC

Clone NameMSMg01-292F03
Chromosome1 (Build37)
Map Location 61,072,140 - 61,072,429
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
Downstream geneLOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292F03.T7 (MSMg01no292_f03.b1)MSMg01-292F03.TJ (MSMg01no292_f03.g1)
ACCAG421072AG421073
length877782
length of high quality
(start - end)
35 (64 - 98)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no292_f03.b1 PHD_FILE: MSMg01no292_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:21 2005CHROMAT_FILE: MSMg01no292_f03.g1 PHD_FILE: MSMg01no292_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACTCACAAAATCCAAACCNGNCNCGGAANTCACTACCACTGCTTTCAC
GCGACCAAGNNAGCTGGGATTAAANTCCTTGGGTCCACCCACTGCCTGTA
TTTATCATATAAAAGCACTTTTTCCTGTGATGTGTGTGTAGTGTGATGTG
TGTAGTGTGAAGAAAGATAAATNTTTTTTTAATTAACACCAAAAAAAATA
AATAGAAAAATGAAAAAATAAAAACCACTAACACCCCACCCCCACACTTT
TTTTTCTACCCCCACACAACCGCCACCCCACACCACAAATCCCACACAAC
AAACCACCCCACACACCCCCCCTTCCAATAAAATTTCCCCCCCCCCCCCC
CAACCCCCCCGNGGCAACTTTTTTTTTCCCCCCCCCCCCCCCCCCCCAAA
GAAATAACAAACCACATACAAATACCCTCGTTTCCCCCCCCCAAATAAAT
AAAAAAAAAACGATCCCCCGCCCGCCCGCCCACACACCACTCTACTCCCC
GTCCCTCAATTTACATATCATCCCCCCCACCTACACCAAAACAACCCAAA
ACACACGACCCCAAACACAACACTAACGAACCCACCCAAACCACCCCCAA
CACCACACCCCTACAACCCTCCCAACAAATCCCAAAAAACACTACCAACC
CACACCAACTCCTCACACCTACCACAACATAAACAATCCTCCAACATAAA
CACAACCAACCCCCCCGCTCACCCCACCACACACCCCCATCTTTTATTTT
TTTTTTACCACACACCCCAACCCAGCCCCACTCATAAAGATACACACCAC
ACTCCCCATCCACCCACAAGTAACCAACATCAACAACAACCAATAATACA
ATCCCAACTACTCTACCACCCCAACAC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAAATTGTAAATTTCCACAA
GGCAAAAGGGATGGAGGTTCTGCAAACTTGAGCTCAGGCGGCATAATGTA
GGATACTCAGTCTAGGTAGCTTCGCTCTTTACCACGCATTAGTGTCCTGA
GAATTTCTCTGAGGGGGCAGCTTGAGCGCTAGTGAAGCCAGGGTTCTTAA
AAATCTGCTTTGACACTCCTTGGTTCTAAGATGGCTTCCTTTCTTTCTGA
GAATTTTCATGTTGCTGATTCTCCTATACTTTTCCTCACCCCCACCCCCT
GCTCCAATCCTTTCCTGATTTTTAGACCCCACCACTCTCTGCAAGCAAGA
GGAGCTGATAGTGACAGACCCCCCCTCTCTACCACTGATATGGGCTTAAG
AGTATTTAGGTTATAAACAATAGTTTCCTGTCCAATAATTTCTGATACCA
CCTCTAAAATGGTTGTAGGGGAGGTAGCAAGCTTTGTCCCTGTACCATAT
ATGGACTCTTTCTTGTTCTTCTTCTCTTCTAGAGTTTTTCATACTCCTCT
TGTTGTCCCGTGTCTCTTTTTGTTTCCTTTACTTCCTCGATTCTTCCTCT
TTTTTTTATTACCCCCTTTTTTCTCCCTTCCTTTCTCCTTTTTATTTTTT
TACTTTAACGATATTCTTCTTCCATCTCCTTTTTCACCCCCCGCTTATAA
TTCCCTTCTTTTCCTTCTCCTTTTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_f03.g1 MSMg01no292_f03.g1 CHROMAT_FILE:
MSMg01no292_f03.g1 PHD_FILE: MSMg01no292_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:21 2005
         (290 letters)



>mm_chr1_61071940_61072629
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaaattgtaaatttccacaaggcaaaagggatggaggttctgcaaacttgagctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaaattgtaaatttccacaaggcaaaagggatggaggttctgcaaacttgagctcag 260

                                                                       
Query: 61  gcggcataatgtaggatactcagtctaggtagcttcgctctttaccacgcattagtgtcc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggcataatgtaggacactcagtctaggtagcttcgctctttaccacgcattagtgtcc 320

                                                                       
Query: 121 tgagaatttctctgagggggcagcttgagcgctagtgaagccagggttcttaaaaatctg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagaattcctctgagggggcagcttgagcgctagtgaagccagggttcttaaaaatctg 380

                                                                       
Query: 181 ctttgacactccttggttctaagatggcttcctttctttctgagaattttcatgttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgacactccttggttctaagatggcttcctttctttctgagaattttcatgttgctg 440

                                                             
Query: 241 attctcctatacttttcctcacccccaccccctgctccaatcctttcctg 290
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctcctagacttttcctcacccccaccccctgctccaatcctttcctg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)