BAC Information

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BAC

Clone NameMSMg01-292H06
Chromosome1 (Build37)
Map Location 153,781,422 - 153,962,011
singlet/doubletdoublet
Overlap gene1700025G04Rik
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
Downstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H06.T7 (MSMg01no292_h06.b1)MSMg01-292H06.TJ (MSMg01no292_h06.g1)
ACCAG421169AG421170
length750778
length of high quality
(start - end)
194 (103 - 296)238 (130 - 367)
definitionCHROMAT_FILE: MSMg01no292_h06.b1 PHD_FILE: MSMg01no292_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:31 2005CHROMAT_FILE: MSMg01no292_h06.g1 PHD_FILE: MSMg01no292_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,961,819 - 153,962,011)(153,781,422 - 153,781,659)
sequence
CTCACAGTTTTCAGAAAATCCGCGGAATTCAGTAACCTTCCCATGAATGC
ACAAGAGAACTCTGCTTGCAAATGTAAGGCCAAGGAGGAGCTGGAGCCCC
TGGAAATATTTCTGGTTCTATCTTGGAGTCAGAACCCTGAGCACTAACTA
GCCTCTTCTTCCCACATCTCATTAAAAAACCAGAGTGAAGAGTACTGTTG
CTCATTTTTAAGAGCACAATGACTCCTTCCTTTTCTCTTGCTTGCTCTCC
AGGACTGTTTTTGAACTAAGTGGTTGGACCCTATGGATATGTTTATTTTT
TTACATTTTTATGTCTTCAAGAAGATTTTTCTTTGAATTNCTATTATTTC
CCCCCCCGCACCGTGTGTGTGTATGTATATACATATGCACCCCCCCCCGC
ATGCATTAATATGAACACAAGCATACGTTTTGAGAGGGGTGGCCAATTAT
ACTAGTTCTACAGTTACAAGTTTATAGGGAAACTTCAAAGGGATGAGCTG
AATCTACACATACCATGGACTTACAAGCGAGTGCCTTAATGGTAAATATC
TCCTTCAGCAGACTGACTTTGTTAGCTGGCCCAATATATTGGCTTATATT
ACCTCCTTAGGTACCCTGCTCTCCTTCCTTACAAAGATCTATTTGCTAGA
CTGTAGTTCGATGTGTTCACTGTTTACATCCACCTTTTGTTTTACCTGCA
CACTTTATCATCTTTTTTATAAATTTGCCGCTGTTTTCTGTTTTTATCCT

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTTTGGTCTTGGGGTGAGAC
AGAGCACTGTGGCAACTGATTTTTCCCCATGGAGAAAGCCACTCATTTCA
TAGTGTCCAGAAAGCAGACAGGCAAGAAGGGACCAGGGACAAAGACACGC
TCCTTGTGACGACTTCCTCTCATCAGTTCCCATCAGCCACCATTAATACC
GTAAAACTAGAATCCACCCGGAGCTAATCCACTGATGAGCGTAGGGTCCT
GCTACCCAGGCACCTCTCAATGACTGGACCACCAGCTGGAAGCCAGGCTC
TCAAAACATGAGCTTTTGTGTATAAGCTCCTCTCCCAGTCACCACAGCAG
ACAACAGTGGTAGGCACCCCCCCCCTGCTGAATGAATACATGAACATTTG
CTTTTCTTGTTTGCTGCACTGTCCAGTAACAATAATTCCATTTGAAATAA
GCTGGACATAGCAAAGGATGGAAAATCTTGAGGATGAACCGTAGTTCAGA
GACACAAGGGTTGGTGGCCTTTACTGCACCGTTGACTAAAGCTGTGAGTT
TAGGAGAGCAGGATAGAAAAGAAAAACAAGCGGGCAAGAAATAGCATTTC
CCATAATTCTTGGCAACCACCCTCTTTACGCTATGGTATGAGAAGTTTGT
GGCGTTTTTTCTCTCTCAAAACATTGTTGAAGTTTCCTTCATGTCCGGTC
AAAGTAATTTACTTTCTTTTTAACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h06.b1 MSMg01no292_h06.b1 CHROMAT_FILE:
MSMg01no292_h06.b1 PHD_FILE: MSMg01no292_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:31 2005
         (194 letters)



>mm_chr1_153961619_153962212
          Length = 594

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatatttctggttctatcttggagtcagaaccctgagcactaactagcctcttcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaaatatttctggttctatcttggagtcagaaccctgagcactaactagcctcttcttcc 334

                                                                       
Query: 61  cacatctcattaaaaaaccagagtgaagagtactgttgctcatttttaagagcacaatga 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacatctcgttaaaaaaccagagtgaagagtactgttgctcatttttaagagcacaatga 274

                                                                       
Query: 121 ctccttccttttctcttgcttgctctccaggactgtttttgaactaagtggttggaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctccttccttttctcttgcttgctctccaggactgtttttgaactaagtggttggaccct 214

                        
Query: 181 atggatatgttta 193
           |||||||||||||
Sbjct: 213 atggatatgttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no292_h06.g1 MSMg01no292_h06.g1 CHROMAT_FILE:
MSMg01no292_h06.g1 PHD_FILE: MSMg01no292_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:31 2005
         (238 letters)



>mm_chr1_153781222_153781859
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagaaagccactcatttcatagtgtccagaaagcagacaggcaagaagggaccaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggagaaagccactcatttcatagtgtccagaaagcagacaggcaagaagggaccaggga 260

                                                                       
Query: 61  caaagacacgctccttgtgacgacttcctctcatcagttcccatcagccaccattaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagacacgctccttgtgacgacttcctctcatcagttcccatcagccaccattaatac 320

                                                                       
Query: 121 cgtaaaactagaatccacccggagctaatccactgatgagcgtagggtcctgctacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtaaaactagaatccacccggagctaatccactgatgagcgtagggtcctgctacccag 380

                                                                     
Query: 181 gcacctctcaatgactggaccaccagctggaagccaggctctcaaaacatgagctttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacctctcaatgactggaccaccagctggaagccaggctctcaaaacatgagctttt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)