BAC Information

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BAC

Clone NameMSMg01-292M22
Chromosome1 (Build37)
Map Location 183,279,964 - 183,280,282
singlet/doubletsinglet
Overlap genenone
Upstream geneItpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519
Downstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M22.T7 (MSMg01no292_m22.b1)MSMg01-292M22.TJ (MSMg01no292_m22.g1)
ACCAG421427AG421428
length782797
length of high quality
(start - end)		323 (45 - 367)192 (77 - 268)
definitionCHROMAT_FILE: MSMg01no292_m22.b1 PHD_FILE: MSMg01no292_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005CHROMAT_FILE: MSMg01no292_m22.g1 PHD_FILE: MSMg01no292_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATTCTCCTATCATGGAGAATAGGTGACCACACATTACAGTTCTG
GACTGTACTGGCCCAGAACCCATCTACTCAAATGAGCCCATGGTTGCCTC
CCCTCATCCCTTCTGCCTGTTCTTTGTTCTATTCCAAGTCACTACACCTG
CAATTCTTAAAGTCTTTTTCCTCTGCCCGACACCTCTCAGGAAATGTACT
GTCATTTGAAGATGTTATATAAGCTAGGATTCAAAGCCACCTATTTGAGA
ATTCCTCATTCTCTGTGCTTCTCCCACGGGTATATGAAATATACATGTTA
GCAAATTTATTTGTTTTTGTTTGCACCTCCCTCTTTTATCATAAAGGTCT
CTTGCAAACTAAGAACACCCCCTATAAATACACACACACATTCATCAACA
TGTCAATCACATTATATAAAAGTTTAGGGTTTAATTTTTTAAATTATAAT
TATCAGTCAAAAGATTGATTACAAATAAAATATATTTTATTCCATAAAAG
AGTTGAGAAAAATCTGAATTCAACAAATGTTGATAAAAACAACTTAAAAT
TCTATGAAAATATACTTCCCATGTTAAAACTACCCCGACTTGTTTCTTAT
CAAATTCCACCACTCCCTTAACTGAATCACTTTATACCCCCTTGCCATAT
AAACTGGTGATCATATTAAGAAATCTTTTCTATTTAATATTCCCTGCCTA
CCCCCTCTCTTTTAACGAATATCACTTGCCTT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCA
TAAAAACCCCTAGCTTCCAAGCCTCGTGGCCGACATTTGTTATCTCCTGT
GTGAGACGCATGTCGGTCAGGAGCTCCATCATTAAACTGCCTCGTGTGAT
TACAGCAATGGATTCTCGTGTTTCTTTGGGTGCTCTCTCACTCCCGAGAC
TAGAGTGGGGGGGGGGNNNNNNNNNGNNNNCTANNGNNNTGTTNTTNNNT
TTGGTGTGTGTTTTTTGGTTGTTTTTTTTTTTTTGTGTGTTTATTGTTGT
GGNGGGGGGGGGGTTTTTTGGTTTTTTCCCCCCCCCCCCCCTTGTTTTTT
TTTTTTTGGTGTGTGTTTTTTGCCCCCCCTCCAAAAAAAAAAAAAAAATC
TTCCCGGGGGCGGGGTTGTTTTTTTCCGTTAATTATTTTTTATTATCATA
ATTAACACATTTTTCCACATTCTTTTTTTACACCCTTTAATCACATTATT
TATATCTTCCTTCTAATTTTCTCCCTTTTTCTTTGTTCCTATACCTGTTC
ACTTTAATTTTTTTTTTTTTTATTTTCACCCACACTTCTGCTTTTATATC
TTATATACTTACTTATCCCACACCTCTGCTTTTCCCTCCTCTTTTCTTTC
CCACCACCTTTTCTCGTGTTTTTTTCTTTATTTCTACATTTTTACTACAT
AACACACCTATTTTTCTTTTTTTTATACTTATCCCACCTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m22.b1 MSMg01no292_m22.b1 CHROMAT_FILE:
MSMg01no292_m22.b1 PHD_FILE: MSMg01no292_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:59 2005
         (323 letters)



>mm_chr1_183279760_183280482
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacattctcctatcatggagaataggtgaccacacattacagttctggactgtac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattctcctatcatggagaataggtgaccacacattacagttctggactgtac 264

                                                                       
Query: 65  tggcccagaacccatctactcaaatgagcccatggttgcctcccctcatcccttctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tggcccagaacccatctactcaaatgagcccatggttgcctcccctcatcccttctgtct 324

                                                                       
Query: 125 gttctttgttctattccaagtcactacacctgcaattcttaaagtctttttcctctgccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctttgttctattccaagtcactacacctgcaattcttaaagtctttttcctctgccc 384

                                                                       
Query: 185 gacacctctcaggaaatgtactgtcatttgaagatgttatataagctaggattcaaagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacacctctcaggaaatgtactgtcatttgaagatgttatataagctaggattcaaagcc 444

                                                                       
Query: 245 acctatttgagaattcctcattctctgtgcttctcccacgggtatatgaaatatacatgt 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctctttgagaattcctcattctctgtgcttctcccacgggtatatgaaatatacatgt 504

                              
Query: 305 tagcaaatttatttgtttt 323
           |||||||||||||||||||
Sbjct: 505 tagcaaatttatttgtttt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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