BAC Information

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BAC

Clone NameMSMg01-293D09
Chromosome1 (Build37)
Map Location 76,681,399 - 76,681,717
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293D09.T7 (MSMg01no293_d09.b1)MSMg01-293D09.TJ (MSMg01no293_d09.g1)
ACCAG421720AG421721
length793765
length of high quality
(start - end)
323 (45 - 367)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no293_d09.b1 PHD_FILE: MSMg01no293_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:33 2005CHROMAT_FILE: MSMg01no293_d09.g1 PHD_FILE: MSMg01no293_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTATGAATTTTATTGTCATAAGCTCTTAAAACTCACAGATTCAAT
ACATCCACGTTTTAGGATGATGTCCCATGAAAATAGCTAAACAGTATTGG
TATTTATCTTTACTTCGAAAAGCTCAATAGAATAATTATAGTCAAAATTG
TTCCCAATTCTGCTGTATGCCCTCATCAATCAAGAAGGTTAGAGAAAATA
ATGTTTTTTTAAAAAGTATGAGAAAATGTATAGAAAAGGACTACTAGTAA
TATATGTTAATAGAAATCGTAAAAGGAAAGACGAGAAGGGCAAAATGGAG
AGGAGAAGGAGAAATATGTATTGAGGTAGAACATCGAGGAGAAGAGGGGA
AGGAGAAAGAAGAAGAGGAAGCGGCGGTGAAGGATGAGGAGAAAAATATG
AGAAGGGGGAAGGCTGTGAATACATCTCTGACACATAAGCTTGCAGGAAT
GATTATCATAGTTTGGATCCCCATATACCCAGTTTAAAGCCTGGTTTGTT
TGGCGAGCCTGTCTATAATTCTAGTTTCAGAACACACTGACTGTTTTTCC
TCCAAGAAAAATGTTTATTATTTGGTCAATTCCTGGTTTATGATGCGAAC
CCTTGTTTTCCCGTATCTTGACCCTCTGAGCCTCCTTACCGCATGATTCG
TGATTCATTAACCACTTTGCTTCGGTCCGTCCTTATTTCTATTGATATGG
TGTCTTCTACTTCTTTTCTATTCTTCTCCTTTTCTGTTACCTN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCCACTGAGATCTATCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCC
TTCCTTCCTTCCCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTCTTTCT
CTTTCTTTTTCCTTTTCCTTTTCCTTTTCTTTTTCTTTTTCTTTTTCTTT
TTCTTTTTCTCTTTCTTTTTCTTTTTTCTTTTTTTTGAGACAGGGCTTCT
CTGTGTTCCTGGCTGTTTTGTTTTCTCACCCCGCCCCACCAGGCTGGCCT
TGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAAAGAAGGAATTAAAGG
CATGCACCACTACTGCTCTCCACTGAGATTTCTATCTGCTGTCTTTCACC
CTGGGCAATGATTGTCCTTCCTTATCAATCTTTCATATTCAGATGACTCC
TATAGTAGGTTGAATAATGGCCAAACAAATTTAAGCGACTCTAATCCTGG
GACTCTAATTTGGAAATCTCAATAGATGTGGTTAAATAAGGATGTTGAGA
TAGCCTGTAAGTGTTTTCAAAGTGCGCTTATAATGAGAGGCAGAGAATGA
TTTAATACACATGTACTCCTGGGGGTAAGGAGGAGAGCGAACCAAAGACT
ACAGTGAAGAGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_d09.b1 MSMg01no293_d09.b1 CHROMAT_FILE:
MSMg01no293_d09.b1 PHD_FILE: MSMg01no293_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:33 2005
         (323 letters)



>mm_chr1_76681195_76681917
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttatgaattttattgtcataagctcttaaaactcacagattcaatacatccac 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 523 gaattccttatgaattttattgtcataagctcttaaaactcacggattcaatacatccac 464

                                                                       
Query: 65  gttttaggatgatgtcccatgaaaatagctaaacagtattggtatttatctttacttcga 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gttttaggatgatgtcacatgaaaatagctaaacagtattggtatttatctttacttcga 404

                                                                       
Query: 125 aaagctcaatagaataattatagtcaaaattgttcccaattctgctgtatgccctcatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaagctcaatagaataattatagtcaaaattgttcccaattctgctgtatgccctcatca 344

                                                                       
Query: 185 atcaagaaggttagagaaaataatgtttttttaaaaagtatgagaaaatgtatagaaaag 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 343 atcaagaaggttagagaaaataatgtttttttaaaaaatatgagaaaatgtatagaaaag 284

                                                                       
Query: 245 gactactagtaatatatgttaatagaaatcgtaaaaggaaagacgagaagggcaaaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gactactagtaatatatgttaatagaaatcgtaaaaggaaagacgagaagggcaaaatgg 224

                              
Query: 305 agaggagaaggagaaatat 323
           |||||||||||||||||||
Sbjct: 223 agaggagaaggagaaatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)