Query= MSMg01no293_n06.b1 MSMg01no293_n06.b1 CHROMAT_FILE:
MSMg01no293_n06.b1 PHD_FILE: MSMg01no293_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:21 2005
(244 letters)
>mm_chr1_91154389_91155033
Length = 645
Score = 331 bits (171), Expect = 3e-95
Identities = 221/249 (88%), Gaps = 21/249 (8%)
Strand = Plus / Plus
Query: 1 agcctcatatcccagctatcttctctggctctgggatctacccctgtccaagtttctgca 60
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 213 agcctcatatcccagctatcttccctggctctgggatctactcctgtgtaagtttctgca 272
Query: 61 gtgtacactgtgtctgcgcactgttttcccagcaccccc-cccaccaccaccaccaccag 119
||| |||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct: 273 gtgcacactgtgtctgcgcactgttttcccagcatcccctccc-------------ccag 319
Query: 120 cactcagtaccagcggcccctcagcagccatggtaacacagatggcttgccgcttctgcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cactcagtaccagcggcccctcagcagccatggtaacacagatggcttgccgcttctgcc 379
Query: 180 t----ttttagggttctgagcttcagggaagcacaccactggattcccacaaccagatcg 235
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacat---agggttctgagcttcagggaagcacaccactggattcccacaaccagatca 436
Query: 236 cagtctcct 244
|||||||||
Sbjct: 437 cagtctcct 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space: 149460
Effective search space used: 149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no293_n06.g1 MSMg01no293_n06.g1 CHROMAT_FILE:
MSMg01no293_n06.g1 PHD_FILE: MSMg01no293_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:22 2005
(291 letters)
>mm_chr1_91337264_91337954
Length = 691
Score = 563 bits (291), Expect = e-165
Identities = 291/291 (100%)
Strand = Plus / Minus
Query: 1 atggtacagaatgttctaaaggcttcctagttggcccatcctctgttcatctctgggata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atggtacagaatgttctaaaggcttcctagttggcccatcctctgttcatctctgggata 432
Query: 61 caggaacaaggaactgttataactacaggggaggtactgggcatgtgcaaggagtgggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggaacaaggaactgttataactacaggggaggtactgggcatgtgcaaggagtgggga 372
Query: 121 tatgcctatcactccaccccacccccagcttcctatcacctggataaaggacatcctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatgcctatcactccaccccacccccagcttcctatcacctggataaaggacatcctccc 312
Query: 181 ctgaacctccttttcctctcctgaaacatgtcagcaggagtgcaggtcctgtaggccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgaacctccttttcctctcctgaaacatgtcagcaggagtgcaggtcctgtaggccatg 252
Query: 241 cagggcggacttcaaaatatacttcagatggacctggcagatgactcagtg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagggcggacttcaaaatatacttcagatggacctggcagatgactcagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
