BAC Information

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BAC

Clone NameMSMg01-294I03
Chromosome1 (Build37)
Map Location 90,128,148 - 90,128,436
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I03.T7 (MSMg01no294_i03.b1)MSMg01-294I03.TJ (MSMg01no294_i03.g1)
ACCAG422662AG422663
length731730
length of high quality
(start - end)
667 (65 - 731)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no294_i03.b1 PHD_FILE: MSMg01no294_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:12 2005CHROMAT_FILE: MSMg01no294_i03.g1 PHD_FILE: MSMg01no294_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGGCCATTCAGTGGGAGACACGAGCTCCGGGGGTACTGGTTAGTTCA
TATTGTCATTCCACCTATACGCGTTGCAGACCCCTTTAGCTCCTTGGGTA
CTTTCTCTAGCTCCTACATTGGGGGCCAAATTATGAGTTTCTTAGAACAA
CAATAGATACAGAATAAATAAAAGGAGATGAACATATATCTCTCCACATT
ATTCATACATCACCACTTTTCCTGCTATCTCTCTTAAAAGAGGACCTGAT
ACTTGCCAATATTACTGAATTAAGAAATGTCTCAGCCTGCTTCCTTTGTG
CTGCATTGGTAGTTGTCCCTTATCCCATCCCTTATAATATGTCTGGTGTC
AGTCCTAAGAACTTTTCCTCGATTTTTGAAGTATCCTTGTTCTTGATCCC
TGAACAAAAACAATTTAAATTCTGCTATGCTAGTCAAAATGATAATTTGT
GCAATTAAACTAGATCTCCTACTCCAGATCTGATTGCCCCTGAAGGGTCT
TTTTTTCGGTGTAATGGTACCTTTACTAAAATTCTTTCCAAAAACATAGA
TAAAGAATTGCTGTGTCTTCCCATGACCCTAGTTCCTCAGTTGACCTTGC
TAAATCTCACTGAGTATTTGAGCTGGAATAGCCCCCCATATATTAGAATC
AAGTGAGCTGTTTTCCTCCTTGTACTGGCTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTTCTAGGAAGACAATTCTGAACACTG
TGTAGATGGAGGAGGGCTGGGGCAGGTTTAGTAGGTAGTACACAGCTGGG
AATGGATCCTGGTTGATGGGGCTTGCTGGGGCTCTTAGTGAAGGAGAGAA
TTAATTCATCATTAGAAACGCACTGTGAGTCTAGAATCTGAGGAAATGTG
GAGGGGTGCTCTCAGCTTGAGTGGAGGTGCCAGGTTTGGAAAGAAGGATA
GACCTAGACTCTGGAAGTCTCCTATGGGATTCTCTCATGTCTGTGAGTCC
TGTCTGCTGTTTTTCTCCATCCCCCACCACAGAACACCGAGTCTTCTTCA
AGAGTCACACATATGCCCTTGAGCAGACATGCTCCCTGGCCAGGACCCTC
CTGCCCTTTCTTTCCACATCAGCCTTCTCCCTGTCCTGTGGCTGTCTGTC
CCTCCACTCCTCTGTAGCGCCTCGATTCCCTGCTCCCTCTCACATCCTCC
CCCTTCTCTTCTTTTCAGTTCACCCTTTTTAAACTTGTGGCATCCCACCC
TATTCCCTGCCATATTATTGATGGCAAAGGGTTTCCTGGTAGACACCTGA
GTATTAAGGTGGTGGGCGGTAGGGTCACTCTCTCTACCTTCTCCCCTCTC
AACCCTCTCCCTGATTCCCTGTGGCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i03.g1 MSMg01no294_i03.g1 CHROMAT_FILE:
MSMg01no294_i03.g1 PHD_FILE: MSMg01no294_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:12 2005
         (291 letters)



>mm_chr1_90127948_90128638
          Length = 691

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttctaggaagacaattctgaacactgtgtagatggaggagggctggggcaggtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttctaggaagacaattctgaacactgtgtagatggaggagggctggggcaggtttag 260

                                                                       
Query: 61  taggtagtacacagctgggaatggatcctggttgatggggcttgctggggctcttagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtagtacacagctgggaatggatcctggttgatggggcttgctggggctcttagtga 320

                                                                       
Query: 121 aggagagaattaattcatcattagaaacgcactgtgagtctagaatctgaggaaatgtgg 180
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aggagagaattagttcatcattagaaacgcactgtgagtctagaatctgaggaaatgtag 380

                                                                       
Query: 181 aggggtgctctcagcttgagtggaggtgccaggtttggaaagaaggatagacctagactc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aggggtgctctcagcttgagtggaggtgccaggtttggaaagaagaatagacctagactc 440

                                                            
Query: 241 tggaagtctcctatgggattctctcatgtctgtgagtcctgtctgctgt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaagtctcctatgggattctctcatgtctgtgagtcctgtctgctgt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)