Query= MSMg01no295_b14.b1 MSMg01no295_b14.b1 CHROMAT_FILE:
MSMg01no295_b14.b1 PHD_FILE: MSMg01no295_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:56 2005
(316 letters)
>mm_chr1_82639807_82640522
Length = 716
Score = 470 bits (243), Expect = e-137
Identities = 291/317 (91%), Gaps = 18/317 (5%)
Strand = Plus / Plus
Query: 9 attcacccagctcacccacccaggccctgtgtagtttctgcctaggagtctatccaaaca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 attcacccagctcacccacccaggccctgtgtagtttctgcctaggagtctatccaaaca 268
Query: 69 cctcttacat--------ggcgggaggcggtctattgccctttcacctctgccc-tgaca 119
|||||||||| || |||||||||||| |||||||||||||||||||| | |||
Sbjct: 269 cctcttacatggggggggggggggaggcggtcttttgccctttcacctctgccctttaca 328
Query: 120 cacacccccaccccccacccctgtcttggaacccctttggtgttggcttacctatcttag 179
| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 329 c---------tcccccaccccggtcttggaacccctttggtgttggcttacctatcttag 379
Query: 180 tgttgaaacatacaaggtttgctggcacacaactccatctagattttttaggtctccaaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 tgttgaaacatacaaggtttgctggcacacaactccatctagattttttaggtccccaaa 439
Query: 240 ccaaaggattttcatcctctccttgtcttttcttttcatcgggttcttgaaagagtagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccaaaggattttcatcctctccttgtcttttcttttcatcgggttcttgaaagagtagtt 499
Query: 300 agtgtggtacctgtggc 316
||||| ||||||||||
Sbjct: 500 cgtgtgatacctgtggc 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_b14.g1 MSMg01no295_b14.g1 CHROMAT_FILE:
MSMg01no295_b14.g1 PHD_FILE: MSMg01no295_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:56 2005
(288 letters)
>mm_chr1_82789087_82789774
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 atttggatttaaacaggaagatggtctcaaagacgcagacatctctgtaatcctggcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atttggatttaaacaggaagatggtctcaaagacgcagacatctctgtaatcctggcact 539
Query: 61 gggagaattgtgagttcaaggccagtctgagctgactgttgagttcgagggtggaacgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gggagaattgtgagttcaaggccagtctgagctgactgttgagttcgagggtggaacgct 479
Query: 121 cacttaacattgttccctaacttatttagagacaatctttaaaaaggacttgagacctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacttaacattgttccctaacttatttagagacaatctttaaaaaggacttgagacctag 419
Query: 181 gtatgcatggttgacacctttggtagaaatcaggtgactgatgaaaagggacaacagagc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctatgcatggttgacacctttggtagaaatcaggtgactgatgaaaagggacaacagagc 359
Query: 241 atcttcactgtacttttaaacctatgcgaaaacaagtttacaggcagt 288
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 358 atcttcactgtacatttaaacctatgcgaaaacaagtttacaggcagt 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
