BAC Information

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BAC

Clone NameMSMg01-295E02
Chromosome1 (Build37)
Map Location 12,345,379 - 12,345,927
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295E02.T7 (MSMg01no295_e02.b1)MSMg01-295E02.TJ (MSMg01no295_e02.g1)
ACCAG423201AG423202
length746746
length of high quality
(start - end)
641 (48 - 688)291 (79 - 369)
definitionCHROMAT_FILE: MSMg01no295_e02.b1 PHD_FILE: MSMg01no295_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005CHROMAT_FILE: MSMg01no295_e02.g1 PHD_FILE: MSMg01no295_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAAGAGATCTACCTAGCCCTGCCTCCAGAGTGCTGGGGTTAA
AGACACAAGCTACCATGTGAAGTTATGGTTATTAAAACAAATTTCTTGTC
ACATTTAAAGCTATATTAAAGCTTGACATGATGAGATGATTTATTTGTGC
TTTTCTTTGTGGTACATGATTTTAAAAAACCAACCAAAGAACCAACCAAC
CTCCTTAAGGCACACAGCACACTGTGATTCTTACACATACAGCCTTTTCT
AAGAAGTGTCTCCTTCCTTTCCTTTCATTGTCTTTTCTTCCTCCTTCTCC
TTCCCTACCCCTGTCTTCTTCTTTTCCTCTTCCCCATCTTCCTCTTCCTT
CTCCCCATCCCCAAATTTGGTAACTTTGTATTTCCTGATAAAATTGTGCA
GAAGACTCACAGACACTTCCCAAGCTACACTTGTGCCTTCTTCATGGTCT
GAGGAATACATTGTCCTTGCTGCAGATTAGCCCTTCCCTATCCTGTGTGC
TGACCCTCTTTCTGACTTCTGCCTGGTTAGTTCCATTTACTCCTATGTCA
TCATAATGTTCCTTCCAACTGCATCATTTTATTAGAGGACTGCCATCTTC
CCACTGGCATCTCTCTGCTCATTATAATGGGTGCTCAGAGCTGGAAGGGA
TGAGTATTATCAAAGCACAAAGGATATTGGTTTCCAAGGATGGTCT
TTTCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTTCTAGATTTTCTCATT
CACTGGGACGTAGTTATTCATGAGCTCTATGTACATTTGTATTTCTGCCA
TATCACTTGCAATGACTCAATTCTGCCTGTTATTTTGTCTTCATGATCTG
TGTCTTCTCTTACTTGGGCTAGGTAAAATATTGCTGGGTTTATTGTTTTT
CTAAGATTTTTGTATTCAGCGATATGTTGTGTTATTCTTAGAGTCTCTTC
TATTTTTCCTCAATCTTCTCTTTCTTTCCATCTGCTGATTTTGTTTTGTC
TTGCCCTTTCTTTATTTTTTTCTTCACACCGCTAATTAGGTTGTTTATTT
CATACATTCCCATTTTCTTGACATGGGAAATTATTCCTATAGATGTCCCT
ATGAGTATTTTATTAAGTGCTGGCATATTATGCATCCAATTTCATTTATT
TTAAGTTATTTTTCTAAGTTCTCTTCCAATATCTTGAATGACTCATTGTT
ATAAAGTCCTCATGGATTTCTATATTTTATAAAGTTTTTTGTTTATTTCT
ACTTCTAATTTATTGTGTTCTGGAAACATGTATGTTAAATATGAAAATTA
GAGTTTTAAAGGTTTTTTGAGATTTTGTAGTCTAATGTATGATTTACTCT
AGAGAACACTGCACATGCTGATGAAATGTGTACATTCTGCACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_e02.b1 MSMg01no295_e02.b1 CHROMAT_FILE:
MSMg01no295_e02.b1 PHD_FILE: MSMg01no295_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:08 2005
         (641 letters)



>mm_chr1_12345379_12346418
          Length = 1040

 Score =  986 bits (510), Expect = 0.0
 Identities = 540/550 (98%), Gaps = 2/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaagagatctacctagccctgcctccagagtgctggggttaaagacacaagct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaattcacaagagatctacctagccctgcctccagagtgctggggttaaagacacaagct 490

                                                                       
Query: 65  accatgtgaagttatggttattaaaacaaatttcttgtcacatttaaagctatattaaag 124
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 accatgtgaagtcatggttattaaaacaattttcttgtcacatttaaagctatattaaag 430

                                                                       
Query: 125 cttgacatgatgagatgatttatttgtgcttttctttgtggtacatgattttaaaaaacc 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 cttgacatgatgagatgatttatttgtgcttttctttgtggtacatga-tttaaaaaacc 371

                                                                       
Query: 185 aaccaaagaaccaaccaacctccttaaggcacacagcacactgtgattcttacacataca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 aaccaaagaaccaaccaacctccttaaggcacacagcacactgtgattcttatacataca 311

                                                                       
Query: 245 gccttttctaagaagtgtctccttcctttcctttcattgtcttttcttcctccttctcct 304
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gctttttctaagaagtgtctcgttcctttcctttcattgtcttttcttcctccttctcct 251

                                                                       
Query: 305 tccctacccctgtcttcttcttttcctcttccccatcttcctcttccttctccccatccc 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tccctacccctggcttcttcttttcctcttccccatcttcctcttccttctccccatccc 191

                                                                       
Query: 365 caaatttggtaactttgtatttcctgataaaattgtgcagaagactcacagacacttccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 caaatttggtaactttgtatttcctgataaaattgtgcagaagactcacagacacttccc 131

                                                                       
Query: 425 aagctacacttgtgccttcttcatggtctgaggaatacattgtccttgctgcagattagc 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aagctacactggtgccttcttcatggtctgaggaatacattgtccttgctgcagattagc 71

                                                                       
Query: 485 ccttccctatcctgtgtgctgaccctctttctgacttctgcc-tggttagttccatttac 543
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 70  ccttccctatcctgtgtgctgaccctctttcagacttctgccctggttagttccatttac 11

                     
Query: 544 tcctatgtca 553
           ||||||||||
Sbjct: 10  tcctatgtca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space:   649930
Effective search space used:   649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)