BAC Information

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BAC

Clone NameMSMg01-295F15
Chromosome1 (Build37)
Map Location 156,359,913 - 156,360,223
singlet/doubletsinglet
Overlap geneCacna1e
Upstream geneNpl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295F15.T7 (MSMg01no295_f15.b1)MSMg01-295F15.TJ (MSMg01no295_f15.g1)
ACCAG423269AG423270
length744755
length of high quality
(start - end)
317 (45 - 361)281 (76 - 356)
definitionCHROMAT_FILE: MSMg01no295_f15.b1 PHD_FILE: MSMg01no295_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:16 2005CHROMAT_FILE: MSMg01no295_f15.g1 PHD_FILE: MSMg01no295_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTTTGTACCCCATTTTTAAATAGGATAACTTGTTTCT
CTGGGGTCTAATTTTTATTCTCACATTTAATAGACATAATATTTTTGTCA
AATTGCTCTGATTCTGAGAGCTTTCCATTTCTGAGTGTATCTCATCATGG
ATAGGCAATGAAGAAGGAATATGGCAACATTTTTGTTTCATAGAATCTGA
ACACACTGTGAGGAGCCTATCTATCCTGGGCAGGAATATATGAGTAGACT
TAGTTAACTTGAAAAGTTTTAAAAAGTCTCTTCTTGGGTGGAGGGTATAG
TCTAAGATGTTTTTTTCCTCCTCACTCCCCCACCAGAAAGAATGCTGTAC
ATTAGATCCATGTCACCCCCCTCTCTAAAGACGCAGAACTTATGGGTAGT
CTCTATATAGTAAGGGAATTTATTGATGACTTACAGTCTGTAGTTCAACT
CTCCAACAATGATCAGCAGAAGCAGCTGTGAATGGAAGTCCAAGGATCTA
GCAGTTGCTCAGTCCCGCAAGGCATGAAGGCAAAGAAGAGAGAATATTCC
TTCTTCCAGTGTCCTTATGTAGGTCTCTAGGAGAAGGTGTGGCCCAGATT
AAAGGTATGTACCACCATGCCTGGATCTGGGACTTGTTTTGTTCCAGATG
ACCTTGAACTCATAGATCTCCTTACCTTAGTCTCCTGGGAATCN
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAAATAACTCCACCCTCTGCAAGC
CAAGTGTTCAAATACAATAAAGAAATCATTTACGAGGCACATTTCACCTG
CAAACAACAACAAATAGTATATTAATGTAGTGATTTGTATTTGCTTGATG
ACTAAGAATATTGAGCATTTTCCATACAGTTGTTGGCCTTTTATGGTTTG
GGGGGAAATGGTTCTGTTCAGACTATTTACCCACTTTGAGTAGGATTATT
TAAGTTCAAATAGTTCCTTACTTATTTTGTATAACAGCCCTCTATCAGAT
GAGCAGCTATTGAATTTATCTCCCCCCCCCCCCGCGTATCTCTTCTTCTT
CTTCTTCTTCTTCCCCCCCCCCAACAAAAAACAACAACTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCTCT
CTCTCACTATCACTCATCACCCTTATATCCCCTTCCCTCTGTTATATTTT
TTTCTTACCCCCCTCCTTAACACCAATACTATTATTTTCCATTTTCTTTT
TGTCTCTTCGTCTTCCTTCCTCTTTTTTAGATTTGCCCCTGCTTTTCCTC
CTTTTATTTTAACCCCTCTATCCTCTTCTCTTTTTATATCTAAATTTTAA
AATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_f15.b1 MSMg01no295_f15.b1 CHROMAT_FILE:
MSMg01no295_f15.b1 PHD_FILE: MSMg01no295_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:16 2005
         (317 letters)



>mm_chr1_156359545_156360261
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttagctttgtaccccatttttaaataggataacttgtttctctggggtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaattctttgtttagctttgtaccccatttttaaataggataacttgtttctctggggtc 620

                                                                       
Query: 65  taatttttattctcacatttaatagacataatatttttgtcaaattgctctgattctgag 124
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taatttttaatcttacatttaatagacataatatttttgtcaaattgctctgattctgag 560

                                                                       
Query: 125 agctttccatttctgagtgtatctcatcatggataggcaatgaagaaggaatatggcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agctttccatttctgagtgtatctcatcatggataggcaatgaagaaggaatatggcaac 500

                                                                       
Query: 185 atttttgtttcatagaatctgaacacactgtgaggagcctatctatcctgggcaggaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atttttgtttcatagaatctgaacacactgtgaggagcctatctatcctgggcaggaata 440

                                                                       
Query: 245 tatgagtagacttagttaacttgaaaagttttaaaaagtctcttcttgggtggagggtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatgagtagacttagttaacttgaaaagttttaaaaagtctcttcttgggtggagggtat 380

                      
Query: 305 agtctaagatg 315
           |||||||||||
Sbjct: 379 agtctaagatg 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)