BAC Information

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BAC

Clone NameMSMg01-295G02
Chromosome1 (Build37)
Map Location 143,311,124 - 143,489,200
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G02.T7 (MSMg01no295_g02.b1)MSMg01-295G02.TJ (MSMg01no295_g02.g1)
ACCAG423289AG423290
length736724
length of high quality
(start - end)
318 (50 - 367)235 (130 - 364)
definitionCHROMAT_FILE: MSMg01no295_g02.b1 PHD_FILE: MSMg01no295_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:18 2005CHROMAT_FILE: MSMg01no295_g02.g1 PHD_FILE: MSMg01no295_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,311,124 - 143,311,437)(143,488,967 - 143,489,200)
sequence
AATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATATATATTAAGAATTGTGAGCATGGTTGTTTTTATTTTT
TTTCTTATTCTTTGAGAGGCTTGTTCTTTCTTTCCTGATGAAAAATAGAT
AGGGAGAGGACTAAGGGGAGTAGGGAATTGAAAAGGAGAGAATAATTTAT
TTTCAAGTATAAAAAGAGAAAAAAATAAACAACAATTATGTAAAAGAGTA
ATTGATAGTTCTATCCTTTCAATGACTTAGAATCATGCTCTATCATACAG
AGACATAATTCTTTAAGACAATTAGGACCTACATGCAATTATAAAATTGC
TTCAGTGATGGGTTATGATATATATAAGGCCTGAATATTTGATGGTTAGT
TTGATAGTTAATGCAGATATTTATACTGTGTTTTCAAAAACCCCCAGGTT
TGCTCAATTCTATCCTGAAATCTCCCACAAGAATCTCTGAGCACACCCTG
ATGTCTGGATGTAGGTATCTTTGTGCATCAGTTTTCATTGATTTATTGGT
AGAGCTTGTCATGAGACAATTATGCTAGACTCTTGTATCCAAGCATACCA
GAGTATCAATCATTCATAGTGCCAAGTATTATCTCTCTTCCATGGGCTGT
GTCTTAAGTTGGGCCCATCAATCGTTGTTCCTTCCCTGAATCTCGGCTCC
ATCTATATCCCTGCTTGCCTTATAGGCAGGACAAAT
NAATACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAAAGCTGTTTTGTTAAAA
ATGTGTCAGGGAGCAGAGTATTAGTCTAATCTCATCTGCTTCTTTCACAG
AAGTCTCACATGTTCATCACACAGCATCTGACCACAACAATGAACTGAGG
AAAGCTCGGCCCTCACAAAAGTCAGAAAGTATTCAATGTGAAAACACTAG
AAAAGGAAAAATGTTTTAGAAAATGTTCCCTGTCTGCAAAGTGGCTTCTA
ATTCCTCACAACAGTATACATTTTATTATTATATTTTTATTTAGTTGTTG
CCAAAAGAGAGCATTANATTCCTTTCCATCGGCCCCAGGAACTTGCAAGC
TTCTTGACTTAGGTTCTAGGAACTGACAAAAATAAAAATGAGTTAGGAGG
AGGGATTGTTAACCAGAGAAATGACTCAGATATTATTTTAGATATTCAGC
AGAGGATGGTCTTGTTGGCCATCAATGGGAGAAGAGGCCCTTGGTACTGT
GAAGGCTCAGTGCCCCAGTGTAGGGGAATGTGAGGGCGGGCAGGTGGGAG
TGGTTGGGTGGGTGGTTTCCTTTTTACCAACTCTTCATGTGGAGAAAATC
CATTCTCCCTACTTTTGTTTTCCCTTTATTAATTTTATTTATCATCCCAT
TTTACCTTCCTCGTTTCCTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g02.b1 MSMg01no295_g02.b1 CHROMAT_FILE:
MSMg01no295_g02.b1 PHD_FILE: MSMg01no295_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:18 2005
         (318 letters)



>mm_chr1_143310920_143311637
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatatatattaagaattgtgagcatggttgtttttattttttttcttattcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatatatattaagaattgtgagcatggttgtttttattttttttcttattcttt 264

                                                                       
Query: 65  gagaggcttgttctttctttcctgatgaaaaatagatagggagaggactaaggggagtag 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaggcttgttcttactttcctgatgaaaaatagatagggagaggactaaggggagtag 324

                                                                       
Query: 125 ggaattgaaaaggagagaataatttattttcaagtataaaaagagaaaaaaataaacaac 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaattgaaaaggagagaataatatattttcaagtataaaaagagaaaaaaataaacaac 384

                                                                       
Query: 185 aattatgtaaaagagtaattgatagttctatcctttcaatgacttagaatcatgctctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattatgtaaaagagtaattgatagttctatcctttcaatgacttagaatcatgctctat 444

                                                                       
Query: 245 catacagagacataattctttaagacaattaggacctacatgcaattataaaattgcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catacagagacataattctttaagacaattaggacctacatgcaattataaaattgcttc 504

                         
Query: 305 agtgatgggttatg 318
           ||||||||||||||
Sbjct: 505 agtgatgggttatg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_g02.g1 MSMg01no295_g02.g1 CHROMAT_FILE:
MSMg01no295_g02.g1 PHD_FILE: MSMg01no295_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:18 2005
         (235 letters)



>mm_chr1_143488811_143489445
          Length = 635

 Score =  391 bits (202), Expect = e-113
 Identities = 226/234 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcatctgcttctttcacagaagtctcacatgttcatcacacagcatctgaccacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 390 tctcatctgcttctttcacagaagtctcacatgttcatcacacagcatctgaccacaacc 331

                                                                       
Query: 61  atgaactgaggaaagctcggccctcacaaaagtcagaaagtattcaatgtgaaaacacta 120
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 330 atgaactgaggaaagcttggccctcacaaatgtcagaaagtattcaatgtgaaaacacta 271

                                                                       
Query: 121 gaaaaggaaaaatgttttagaaaatgttccctgtctgcaaagtggcttctaattcctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaaaaggaaaaatgttttagaaaatgttccctgtctgcaaagtggcttctaattcctcac 211

                                                                 
Query: 181 aacagtatacattttattattatatttttatttagttgttgccaaaagagagca 234
           ||||||||||||||||  |  |||||||||||||||||||| ||||||||||||
Sbjct: 210 aacagtatacattttaagaaaatatttttatttagttgttgtcaaaagagagca 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)