BAC Information

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BAC

Clone NameMSMg01-295G11
Chromosome1 (Build37)
Map Location 32,464,647 - 32,464,952
singlet/doubletsinglet
Overlap geneKhdrbs2
Upstream geneLOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828, EG666108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G11.T7 (MSMg01no295_g11.b1)MSMg01-295G11.TJ (MSMg01no295_g11.g1)
ACCAG423307AG423308
length747750
length of high quality
(start - end)
307 (433 - 739)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no295_g11.b1 PHD_FILE: MSMg01no295_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005CHROMAT_FILE: MSMg01no295_g11.g1 PHD_FILE: MSMg01no295_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCATACTGTGGATGGTGCCATCTCTAGGCTGGTAGGCTTG
GGTTCTGTAAGAAGGCAGGTTGACCAAGGCACGAGGAACAAGCCATTAAG
TGTCACCATCCCCTGCCCCTGATTCCTGTCCTATTTGAGTTCCTGTGAAC
AGTGACATGGACTTGTAAGTCAAATAAACCCTTTCCTCCCCAACTTGTTT
TTTGGTCATGGTGTTTCTTTGTACAAGTAGAAACCCTAAGGCAATCAGGT
AGCTGGGTCTCCCTCCAACATCTTCCCAAACTGTGCTAAGCCCTATTGAA
TGCAAAGTGTGTATTTTTTGAAAACACCACCCTCATAGAGCTGACTGCCA
AGACTACGAAAGGCCTCACCCTAAGAAAACATTTTCTGCAAACAGTGCAG
ACAAGCAGGGGTGAGCTCTTGCTCAGCATCTGGCCATTGCTTCTGTACTG
TGTACTTATGTGTGTCTGCTTTTCTCTGTATATAATTCATACTACTTATT
TATACTCACTCAAAATTTTTCAACAAGTGCCATTTTGAAAATGCTTTTAA
ACTGGGGATTTAGACAAATCCCATTCTGGCCACCACATGAATAATAAATG
TGTGTTTATTTGAACTTCTTGATGGTGAAAGTCCTGCAGACAATAGTCTT
ATTTATTTCTGAACAGGGTTTATGTTAGAAGAAAGATCCCTTGGGCA
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAGGCAGGCACGCCAAGAAG
GCAGGCTGCTGCAAAAGGAGCCAGAAGGCTCCAAAAAATTAGAGGATGTC
TAGGTAGTCAATTGTCTTTACAATTTGTTCTAAGTTTTAGAAGCTATGTT
TCATGTTTCCTATATACTCAGGAAATATTTTATTCGTCCTTAGGTTTCTG
AGAAGATTAAAGACTAGTTATTGTCTCATTAACAAACAAGTTGTTTAATA
TTGAGAGATATGACATAGACTTGAAAGGATGGCTTTCAGATGATAATGCA
AGCTAAAATCATATTATCATTCACCGCCTACCCTTTAGTTAGGATAGATG
GAAGAGTCCTTTATCTAACTGACAAATATGATAGACTAAATGTGAATTGT
ATATCATACTTTGTAATTTACATAATTTTTATGATTATGCTCAATTTATG
TCTGAGAGAAAGCCCTCTTTTTTTTTTCTTTTAATTTGGACAGAAAAGGC
GAGATGTTGGGGATTGGTTCTAATGCTTTGAATTAATCCGGCTCCCAAAA
GCAGGAATCTACATGTCCAAACCCTGAAGGTCCTTGTCCTTAATTGGTTT
TTGATCAGTCAATAAAGAGCCAAGGGCCAATGCTTGGGCAGATAGAGTAA
GAGGGACTTTGAGATTCACACAGGCTAGGAACCTGGAGAGAGGAAAGATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g11.b1 MSMg01no295_g11.b1 CHROMAT_FILE:
MSMg01no295_g11.b1 PHD_FILE: MSMg01no295_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:20 2005
         (307 letters)



>mm_chr1_32464447_32465152
          Length = 706

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgcaaacagtgcagacaagcaggggtgagctcttgctcagcatctggccattgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgcaaacagtgcagacaagcaggggtgagctcttgctcagcatctggccattgctt 260

                                                                       
Query: 61  ctgtactgtgtacttatgtgtgtctgcttttctctgtatataattcatactacttattta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ctgtactgtgtacttatgtgtgtctgcttttctctgtatataattcatactatttattta 320

                                                                       
Query: 121 tactcactcaaaatttttcaacaagtgccattttgaaaatgcttttaaactggggattta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tactcactcaaaatttttcaacaagtgccattttgaaa-tgcttttaaactggggattta 379

                                                                       
Query: 181 gacaaatcccattctggccaccacatgaataataaatgtgtgtttatttgaacttcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacaaatcccattctggccaccacatgaataataaatgtgtgtttatttgaacttcttga 439

                                                                       
Query: 241 tggtgaaagtcctgcagacaatagtcttatttatttctgaacagggtttatgttagaaga 300
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 440 tggtgaaagtcctgcagacaatagtcttatttatttctgaaaaggatttatgttagaaga 499

                  
Query: 301 aagatcc 307
           |||||||
Sbjct: 500 aagatcc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space:   207706
Effective search space used:   207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)