BAC Information

Click to search

BAC

Clone NameMSMg01-295G21
Chromosome1 (Build37)
Map Location 157,622,824 - 157,800,068
singlet/doubletdoublet
Overlap geneQscn6, Cep350
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
Downstream geneLOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G21.T7 (MSMg01no295_g21.b1)MSMg01-295G21.TJ (MSMg01no295_g21.g1)
ACCAG423325AG423326
length770765
length of high quality
(start - end)		320 (42 - 361)249 (439 - 687)
definitionCHROMAT_FILE: MSMg01no295_g21.b1 PHD_FILE: MSMg01no295_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:21 2005CHROMAT_FILE: MSMg01no295_g21.g1 PHD_FILE: MSMg01no295_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,799,752 - 157,800,068)(157,622,824 - 157,623,072)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTGTGAACAGGCTGGCCTGGAACTCTCAGAGATCTGTCTGCCTCTG
ACTCCCAAATGCTGGAATTACCCCAGAATAAGAAATTTTAACAAATCTCT
TTAGAGGATCTTACCTCTTCCTCTCCTGCCACCCTCCTCTCCTCCTCTCT
TTTTGCAAGAGGGTTTATCTATATCTAAGACTGGTCTCAAACTCAAAGCA
ATCTGTGGTGACAGACAGGCTTGAGCCACTCTGCTCAGCTTCTTAGGAAT
TCTTAGAGGTTGAGCCTACAAAATAGGAAATAGGTTTAGTACCATATTCT
GACAACCAAAAGATTTTTGTTTGCCAACCCCACACTTGCTTAACAGTAAT
GTCTGTAGTGGTGCGCGCTTGTAATCACATCTACTCTGGAGGATGAGGGA
GGGAGAATGTCTAGGGTAAGGCCAGCCCAAACTGCTGAGTTCCAGCTAGC
CTGACTGCACAGCACGTCCCTGTCTCAAAATAGAAAGTTTTAAAAAGGGA
CAGGGATGTAGCTCAGTAGTAGATAGCTTGTCTAACATACTCAAGTCAAT
GGGTTTAATTCTCAATATTAGAAAAACCCCACTTTCAAGACAAATTAATC
AGTTCCCATTTAACATAGGACTGCATAGTATTTTGGCATTGACATGGATC
CTGTTTTAATTTTTGACAGATTGCGGGGGGGGAGAAAAGAGATCCCACAA
CCTAAATACTCCAAAATCTA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACCTCAGCTCTCCTTGGTTCCCACACC
TACTGGCTCTTCTTGATGCTCCGGCAACTGGGTGTGCAGGGATGGACCCT
ATAGTAGCTCCGATTCTCCCAAGACTCGCTACACTACTCACCTCTGGTTC
TCAGGTGAGCTATCCTGCAGTTATAGAGTTGCCTTCTGAATCTCAAGGCT
GTAGACCTGTCACTTCTGCTGGGGGGCATTTAAAGTACAGTTGCTCTAGT
GAATGGAGCTTTAAGAAACCTGCTGTATACATACAGCCAAGTAGTGTCAC
AGGGCTTTAATCTATTTTTGCTCCCCTCCCCCTGCCAGCCCCACAATGAC
CAAGGTGGCCACTTACCGGCAAAGAGATGAAATCAAGGATGTGCGTTCTA
GGAAGAGATGAGAGAGGTGGCTCTTCCAGATGAACTAGCTGTTGTTCAGT
GTCTTTTCCACCCAGTCAAGTGCCTGGCAGGCCTAGGGAAGTCCATTGCT
CTCCACAGAGGTGAGCATCAAAGCGCCTGGATACCACCAGCCCTGGCAGG
GGAGCTTCTCCACTATAAGCTTCATAGATGTTTGAGTCTCTCAGCTCCCT
CCTAAGCTATATGGTCTGCTTGTGCCTCGTGGTTTCCAAACACACCTCGT
AACCTAGGAGGCAATGAAACCCTCATAAGGACAGCCACACCCCAAGAGGC
TCAGGCAGGTGGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g21.b1 MSMg01no295_g21.b1 CHROMAT_FILE:
MSMg01no295_g21.b1 PHD_FILE: MSMg01no295_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:21 2005
         (320 letters)



>mm_chr1_157799471_157800190
          Length = 720

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtgaacaggctggcctggaactctcagagatctgtctgcctctgactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggaattcactctgtgaacaggctggcctggaactctcagagatctgtctgcctctgactc 539

                                                                       
Query: 64  ccaaatgctggaattaccccagaataagaaattttaacaaatctctttagaggatcttac 123
           |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccaagtgctggaattagaccagaataagaaattttaacaaatctctttagaggatcttac 479

                                                                       
Query: 124 ctcttcctctcctgccaccctcctctcctcctctctttttgcaagagggtttatctatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcttcctctcctgccaccctcctctcctcctctctttttgcaagagggtttatctatat 419

                                                                       
Query: 184 ctaagactggtctcaaactcaaagcaatctgtggtgacagacaggcttgagccactctgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctaagactggtctcaaactcaaagcaatctgtggtgacagacaggcttgagccactctgc 359

                                                                       
Query: 244 tcagcttcttaggaattcttagaggttgagcctacaaaataggaaataggtttagtacca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcagcttcttaggaattcttagaggttgagcctacaaaataggaaataggtttagtacca 299

                            
Query: 304 tattctgacaaccaaaa 320
           |||||||||||||||||
Sbjct: 298 tattctgacaaccaaaa 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_g21.g1 MSMg01no295_g21.g1 CHROMAT_FILE:
MSMg01no295_g21.g1 PHD_FILE: MSMg01no295_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:22 2005
         (249 letters)



>mm_chr1_157622624_157623272
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgcgttctaggaagagatgagagaggtggctcttccagatgaactagctgttgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgcgttctaggaagagatgagagaggtggctcttccagatgaactagctgttgttca 260

                                                                       
Query: 61  gtgtcttttccacccagtcaagtgcctggcaggcctagggaagtccattgctctccacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtcttttccacccagtcaagtgcctggcaggcctagggaagtccattgctctccacag 320

                                                                       
Query: 121 aggtgagcatcaaagcgcctggataccaccagccctggcaggggagcttctccactataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgagcatcaaagcgcctggataccaccagccctggcaggggagcttctccactataa 380

                                                                       
Query: 181 gcttcatagatgtttgagtctctcagctccctcctaagctatatggtctgcttgtgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcatagatgtttgagtctctcagctccctcctaagctatatggtctgcttgtgcctc 440

                    
Query: 241 gtggtttcc 249
           |||||||||
Sbjct: 441 gtggtttcc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |