BAC Information

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BAC

Clone NameMSMg01-295H06
Chromosome1 (Build37)
Map Location 51,596,898 - 51,597,118
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295H06.T7 (MSMg01no295_h06.b1)MSMg01-295H06.TJ (MSMg01no295_h06.g1)
ACCAG423343AG423344
length761764
length of high quality
(start - end)
225 (48 - 272)40 (78 - 117)
definitionCHROMAT_FILE: MSMg01no295_h06.b1 PHD_FILE: MSMg01no295_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:23 2005CHROMAT_FILE: MSMg01no295_h06.g1 PHD_FILE: MSMg01no295_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCCAATGTTAGGATTTTTCAGAAGGGATTTTCTTTGCACTCTC
AAACTACTCTTTGAAGAACATTAGTACTGGGTCCTAGGGCCCTTCTGCTT
TCAGAAACATCTCTCGTACCTCGTATAGATTAAATCTGCCTCTCGGTAAC
GCGTTGATCCTGGCTCTGTGAGTGTCAGGTCTGGCAGGTCACATACTGCT
TTTGGCAGCTAAGAGAGGTCTAGTAGGCTCAGTGAAGCCTGACGAGCGAG
CGAAGCTCTGCAGAAAGACTCATGTGTGAGAACAGCCTGTACAGATTCAA
AGGGGGAGGATGATAGATCGTTCTCCCCCCCCCCCCCGCCTAAAAGGATA
GCAATCCAGAGAGCTGTGGCCCCCCATTAAAAAAAAAAAAATAGTGTGTG
GGCGTTGGCACTTCTGACTGAGCTGTGCTCCTCTCTATTCATCTTCCACT
CCACCGCTTTCCATATTATGTATGCCTTGAGCACGTACAGGTTATTTATT
CACTTAGCATACTTTTGTTGCTTTTAGTAATATTTTGCCCTTTTTACTTT
TTTTATGGTTTTTTTTCGCTATATTTTCCTTCTTCCTTCCCCTTTTTCTT
CAGTATTGACATAATTTGCGCGCTTCATACTTTTTCGGTTCGTTCTTTTC
CTTTCCTCTGTTTATCCTCTTTTCGTTTGCTAGTTCCTTCCCCCACTATT
CTTTTCATTAT
TCGATGACAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACCAGGCCCAGGGCTCTAATAT
GCAGCTGAGACTGGGGACATAGGGCACACGGAAGGATCACCTTCTCTCCT
GCATACAAAAGATGGGATGGGTGAAGGAGCAAGCAGACTTGCTACAAAAG
AAAAAACTGGAAGATGAGAATGGATCATAAGAAATAAAGAAGAAAGAAAC
CAAGGACTTTGAAAGCCATTCCATTCTAATTTTACCAAAGGGCAATTCTG
CCACTAGTTAACTAATGATTTAGTCCTTACTGCGACTCTCAGAAAACAAT
TTATTCTCCCTTTTTTTAATAATTTCCCCCCCCCCCCCCCAAAGGTTCCA
TACAGGCCATTTGATTGAATCCCCCCTCGAAAAAAAAAAAAACAATAGGG
GGGGGGGGAGCTACTGAACATTTATCCTGACGATTCTTATTTCATCTTCT
CCTCCACTTTCTACTACTTATGTCCAACACTTATACATGCTGAAGCCCCT
ACCCAAGCCTACCTATATCTTCCGTTCTATCCTTTATCATTTCCATACGT
TTTACCCTATACCCTCCTTTTTCGCCCTTTGTATATCCCTTTATATTCCG
CTTTTTACCTGTTCTCATCGGTCTCCGTTTCTCCCCTTTTGTCCTCCTTT
TATTTCCTCTTTTTTTTTCCCGCTATTTCCACCTTTTCCCTTCCCCTTTT
CTTCCCTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_h06.b1 MSMg01no295_h06.b1 CHROMAT_FILE:
MSMg01no295_h06.b1 PHD_FILE: MSMg01no295_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:23 2005
         (225 letters)



>mm_chr1_51596694_51597318
          Length = 625

 Score =  404 bits (209), Expect = e-117
 Identities = 218/221 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccccaatgttaggatttttcagaagggattttctttgcactctcaaactactctt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 425 gaattccccaatgttaggatttttcagaagggattttctttgcactctcaaattactctt 366

                                                                       
Query: 65  tgaagaacattagtactgggtcctagggcccttctgctttcagaaacatctctcgtacct 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgaagaacattagtaatgggtcctagggcccttctgctttcagaaacatctctcgtacct 306

                                                                       
Query: 125 cgtatagattaaatctgcctctcggtaacgcgttgatcctggctctgtgagtgtcaggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cgtatagattaaatctgcctctcggtaacgcgttgatcctggctctgtgagtgtcaggtc 246

                                                    
Query: 185 tggcaggtcacatactgcttttggcagctaagagaggtcta 225
           |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 245 tggcaggtcacatactgcttttggcagcaaagagaggtcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)