BAC Information

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BAC

Clone NameMSMg01-295I02
Chromosome1 (Build37)
Map Location 70,838,016 - 70,838,330
singlet/doubletsinglet
Overlap geneA830006F12Rik, LOC100043210
Upstream geneSpag16
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I02.T7 (MSMg01no295_i02.b1)MSMg01-295I02.TJ (MSMg01no295_i02.g1)
ACCAG423381AG423382
length761746
length of high quality
(start - end)
320 (50 - 369)292 (80 - 371)
definitionCHROMAT_FILE: MSMg01no295_i02.b1 PHD_FILE: MSMg01no295_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:27 2005CHROMAT_FILE: MSMg01no295_i02.g1 PHD_FILE: MSMg01no295_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTCGCTAGCACCCACTTGGCAGATTACAACTGTCTGTAA
GTCCATTTTCAGGGTGCCTAATGCCCACTTCTTGCCTGCACAGGCACTAA
GCACGCATATGGTCAACACTCATACACATAAAAATATGTCTTTTAAAAAT
AAAAAATGTCTTAAAAAATTGAACAAGCAAACATGGCTACCATAGTCAAG
GACCTCCCAGGATGGAGAAATGCATGGGGACAGTTATAATTTCAAATTCG
GAGTACAGTCACAGGTGGCCCTACATTGCCCCGCACACCACCCCCCTGCA
CGCCCCTGTGCCCCTGTGTACGCACACCTGCATCCATGTGTGTGTGTGTA
TGTATATATGTGTATGTATGCGCATGTATATAAGAATAAATATGTGGGGG
CGGGGGGCCCCTTTTTATTTCCCCCATTCCACAAATTATCTCCCCCTACT
TTTTTTCTACCCCATATTTCTTCTCTCTCTCAACAACCACCCCCTTATCC
TTCTCTATACATCTTTTCCCATCCCCATTTTTTTCTCTTTATCCCCCCTC
TACCACCATTTATTTCCTCCCCGTTCCAACCCTCCCCAAAATAACTTTTA
CAATCTTTTCCACCCTTTTTCTTTTATACCCCCTTATTTTGTAATCCTAT
TACCTTACACCCCCTCTTCCTCCCCCCCCTCCCCTCCTTCATCCCTTTTA
CCTCTTTTCTT
CAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCGCCTAAAAAAAAAATGTTTCTTAATCATCAGGGATATTCA
AGTCAAAACAACCCTGAGATTCCACCTCACACCAGTCCGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGCAGAAAGAGGA
ACACTCCTCCATTGCTGGTGGGATTACAAACTGGTACAACCACTCTGTAA
ATCAGTTTGGAGGTTTCTCAGAAAGTTGGACATAATTCTACCGGAAGATC
CAGCAATACCACTCCTGTTTTTATGCCCACAACCTGCTCCAACTTGTAAT
AAGGACACATGCTCCACTATGTTCATAGCAGGATTAATTATAGTAGCCAG
AAGCTGGAAAGAACCCAGCTGTCCCTCAACAGAAGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTATGCAGCTATTAAAAACAATAAA
TTTATGAAATTCTTAGACAAATGAATGGATCTGGAGGATATCATCCTAAG
TGAGGTAACCCAATCATAAAAGAGCACACATGATAGGTACTCACTGATGG
GTGGATATTAGCCCAGAAGCTCAGAATCCTTCTTAGAAGGGGGAACAAAA
TATCCATGGAAGGAGGCACAGAGACAAAGTTCCTTGCTGAGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i02.b1 MSMg01no295_i02.b1 CHROMAT_FILE:
MSMg01no295_i02.b1 PHD_FILE: MSMg01no295_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:27 2005
         (320 letters)



>mm_chr1_70837812_70838531
          Length = 720

 Score =  557 bits (288), Expect = e-163
 Identities = 309/316 (97%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttcgctagcacccacttggcagattacaactgtctgtaagtccattttcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcatttcgctagcacccacttggcagattacaactgtctgtaagtccattttcagg 460

                                                                       
Query: 65  gtgcctaatgcccacttcttgcctgcacaggcactaagcacgcatatggtcaacactcat 124
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 459 gtgcctaatgcccatttcttgcctgcacaggcactaagcacacatatggtcaacactcat 400

                                                                       
Query: 125 acacataaaaatatgtcttttaaaaataaaaaatgtcttaaaaaattgaacaagcaaaca 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 399 acacataaaaatatgtcttttaaaaataaaaattgtcttaaaaaattgaacaagcaaaca 340

                                                                       
Query: 185 tggctaccatagtcaaggacctcccaggatggagaaatgcatggggacagttataatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tggctaccatagtcaaggacctcccaggatggagaaatgcatggggacagttataatttc 280

                                                                       
Query: 245 aaa-ttcggagtacagtcacaggtggccctacattgccccgcacaccacccccctgcacg 303
           ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 279 aaactt-ggagtacagtcacaggtggccctacattgccccgcgcaccacccccctgcatg 221

                           
Query: 304 cccctgtgcccctgtg 319
           ||||||||||||||||
Sbjct: 220 cccctgtgcccctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)