Query= MSMg01no295_i09.b1 MSMg01no295_i09.b1 CHROMAT_FILE:
MSMg01no295_i09.b1 PHD_FILE: MSMg01no295_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:29 2005
(311 letters)
>mm_chr1_126890190_126890902
Length = 713
Score = 567 bits (293), Expect = e-166
Identities = 305/309 (98%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 5 gaattcaccaaactttgtttcctgtgtatgaactgggcatgatactttgctgtcaaggtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaaactttgtttcctgtgtatgaactgggcatgatactttgctgtcaaggtt 264
Query: 65 actatggaaattaagtaaagtatgtttacaataaaaatgagcttgcatgttaaaaaagta 124
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgtggaaattaaataaagtatgtttacaataaaaatgagcttgcatgttaaaaaagta 324
Query: 125 aaaataaaaaaactggt-gtgtgtctgtgtaagagggtggggg-tagttgacgtttcaag 182
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 aaaataaaaaaactggttgtgtgtctgtgtaagagggtggggggtagttgacgtttcaag 384
Query: 183 atatgacttggtatgaccattaatattgattagaaaatggtcatggagacaaacttctgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatgacttggtatgaccattaatattgattagaaaatggtcatggagacaaacttctgg 444
Query: 243 ccaggcctgtgaagaatctagattaagttaattaaggttgaaagacccaccataatggtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaggcctgtgaagaatctagattaagttaattaaggttgaaagacccaccataatggtg 504
Query: 303 ataggtacc 311
|||||||||
Sbjct: 505 ataggtacc 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space: 212608
Effective search space used: 212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_i09.g1 MSMg01no295_i09.g1 CHROMAT_FILE:
MSMg01no295_i09.g1 PHD_FILE: MSMg01no295_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:29 2005
(603 letters)
>mm_chr1_126952668_126953671
Length = 1004
Score = 932 bits (482), Expect = 0.0
Identities = 530/546 (97%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 59 gtccaggacactaagaagtacatttttgcagttgatatcactcagtctaagactttgttg 118
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1004 gtccaggacactaagaagtacatttttgcagttgatatcattcagtctaagactttgttg 945
Query: 119 tggtggccagaacagacccaggggaaggctgctgaatctagatcctcatctgtgtttcct 178
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct: 944 tggtggccagaacagacccaggggaaggctgatgaatctagatcctcatctctgttccct 885
Query: 179 cttccttccccttctttatctttagttttatcttttgggatagggctgtgtaagtaagac 238
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 884 cttccttccccttctttctctttagttttatcttttgggatagggctgtgtaagtaaggc 825
Query: 239 tgggcaaaaacttattatatatccaaggataactttgaatttccaatcttcttatctttc 298
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 824 tgggcaaaaacttattatatatccaaggataactttgaactcccaatcttcttatctttc 765
Query: 299 attccaaatgctggaactacaggtacatgccaccacatctgactttcttctccttttcaa 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 764 attccaaatgctggaactacaggcacatgccaccacatctgactttcttctccttttcaa 705
Query: 359 tgatttatggattt-aaaatatttaattattcaggaatgattagaatataatgcaaaaat 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgatttatggattttaaaatatttaattattcaggaatgattagaatataatgcaaaaat 645
Query: 418 ccctttcagaagattccccatgctgtttagttgtagcaactaacatttgaaaagttgttt 477
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 644 cccttttagaagattccccatgctgtttagttgtagcagctaacatttgaaaagttgttt 585
Query: 478 ctttattttaaatcatgtgtctctgtgtggtgtgtgtattcttgtaggtatgtatgtata 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctttattttaaaccatgtgtctctgtgtggtgtgtgtattcttgtaggtatgtatgtata 525
Query: 538 catgctggcaaccagggcggcagaagtgttggatcccttggagctggagtcataggttgt 597
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 catgctggcacccagggtggcagaagtgttggatcccttggagctggagtcataggctgt 465
Query: 598 tgtcaa 603
||||||
Sbjct: 464 tgtcaa 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
