BAC Information

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BAC

Clone NameMSMg01-295K07
Chromosome1 (Build37)
Map Location 97,226,899 - 97,227,189
singlet/doubletsinglet
Overlap geneTmem157
Upstream geneLOC666025, LOC100040685, LOC383603
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295K07.T7 (MSMg01no295_k07.b1)MSMg01-295K07.TJ (MSMg01no295_k07.g1)
ACCAG423479AG423480
length750748
length of high quality
(start - end)
311 (53 - 363)291 (81 - 371)
definitionCHROMAT_FILE: MSMg01no295_k07.b1 PHD_FILE: MSMg01no295_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:38 2005CHROMAT_FILE: MSMg01no295_k07.g1 PHD_FILE: MSMg01no295_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTATAAACACACTTTATCTAATCAACCAGTTCTATTT
TTTTTATTACGTATTTTCCTCGTTTACATTTTCAATGCTATCCCAAAAGT
CCCCCATACCCACCCACCCCCAATTCCCTACCCACCCACTCCCCCTTTTT
GGCCCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATG
GGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTTATACATATGC
AGCTAAAGACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTACA
CCTATAGGGTTGTATTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCT
CCATTGGGGGCCATGCCACCCATACAATAACTGACAGTGATCATCCACTT
CTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTATTATCTG
GGTCCTTTCAGAAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGG
AAGCTGATTATGGGATGGATCCTTGCATATGGCAATCACTAGATGGTCCA
TCCTTTCGTCACAGCTCCAAATTTTGTCTCTGTAATTCCTTCCATGGGTG
TTTTGTTCCCAATTGTAAGAAGGAGCAAAGTGTCCAAACTTTGGTCTTCG
TTCTTCTTGAATTTCATGCATTTAGCAAATTGCATCTTATATCTTGTGTA

ATTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAATTCCAGGGCGGGGG
AGGTTATAGGGGACTTTTGGAGAGGAAACTAGAACAGGGGATAACATTTG
AAATGTAAATGAAGAAAATATCTAATAATAATAAAAAAGAAAGAATTCCT
TTAGAAGACCATTCTGATAGCACTCCTAGTAAAAAGGGCGGCATAGTGTC
TACTTAGTCATCCCTGTGACAGTTTTAGTACCTCATGTTCCCAAGACAAA
ATGAATTGTTCCCGCCTAGTGAAATGTGCATCAATTACTGAGATATTTTC
TACGCACTAATGTTTATTACTGCATACATGCACATTGCATATTATGTAAT
GAATATTATTTCTGCTAACACAACGTAGATTCATTTTTAATTTTTATACA
ATATAGTAATTAAAGCGAGACACAGTAACTCATACTTACAATCTCATCAT
TCAAGAGGCTCAGGACCACCACAAGTTCAAGACCAGCTGTTCACATAGCA
GTACGATGTATATATTTTGAATATAAATTATGTATATGTGCATATACATA
ATACTATATTTATAAAATGTATGTGTGTATATACACAATACACATATACT
AGTCTATCCCATTGGATATGTAATTTGGATATTATATATAATTGGTATAG
ACTACATATATGCCTACACACACGCACACCATACACACACACACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_k07.g1 MSMg01no295_k07.g1 CHROMAT_FILE:
MSMg01no295_k07.g1 PHD_FILE: MSMg01no295_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:38 2005
         (291 letters)



>mm_chr1_97226591_97227281
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagaattccagggcgggggaggttataggggacttttggagaggaaactagaacagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taagaattccagggcgggggaggttataggggacttttggagaggaaactagaacagggg 540

                                                                       
Query: 61  ataacatttgaaatgtaaatgaagaaaatatctaataataataaaaaagaaagaattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataacatttgaaatgtaaatgaagaaaatatctaataataataaaaaagaaagaattcct 480

                                                                       
Query: 121 ttagaagaccattctgatagcactcctagtaaaaagggcggcatagtgtctacttagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttagaagaccattctgatagcactcctagtaaaaagggcggcatagtgtctacttagtca 420

                                                                       
Query: 181 tccctgtgacagttttagtacctcatgttcccaagacaaaatgaattgttcccgcctagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tccctgtgacagttttagtacctcatgttcccaagacaaaatgaattgttcccgcctagt 360

                                                              
Query: 241 gaaatgtgcatcaattactgagatattttctacgcactaatgtttattact 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaaatgtgcatcaattactgagatattttctacgcactaatgtttattact 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)