BAC Information

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BAC

Clone NameMSMg01-295L24
Chromosome1 (Build37)
Map Location 143,062,931 - 143,063,223
singlet/doubletsinglet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L24.T7 (MSMg01no295_l24.b1)MSMg01-295L24.TJ (MSMg01no295_l24.g1)
ACCAG423557AG423558
length778745
length of high quality
(start - end)
312 (43 - 354)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no295_l24.b1 PHD_FILE: MSMg01no295_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:46 2005CHROMAT_FILE: MSMg01no295_l24.g1 PHD_FILE: MSMg01no295_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAATGGCTGAGAAGGACCTAAAAAAATGTTCAGCATCCTTAATCATC
AGGAGAATGCAAATCAAAGCAACCCTGAGATTCTACCTCACACCAGTCAG
AATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTG
GAGAAAGAGGAAGACTCTTCCATTGTTGGTGGGATTGCAACCTTGTACAA
CCACGCTGGAAATCAGTCTGGCGGGTCCTCAGAAAATTGGACATAGTAAT
ACTGGAGGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCC
TAACCGGTAAGAATTTTTTATGCTCCCCCCCCCCCCCTAGACTCTTTTTT
TATAAAGCCCAAACGTTGGAAAAACCCCAAAATGAAAAACAAAAGAAGAG
TGGGGGCGGAGNTTGGGGTGTCTGANNNNNAGGGGGGCCCCNNCTCCCCT
TTTTAAAAAAATTGATTTTTTGAAATTTCCCATGGGAATTAGGGGGGGNN
NNNNTCTCTNNNNNCCGAGTGTGGGNANCCCNNCCCCCCCAAAACTCTTA
TGAAGTNTCCTTCTTNGGGGGGGGGGGGNCCTTTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAACAATTTAANNNNAAATTTANACCTNNNNNANAA
AACACAAAAANTTGCTTCCTTCCTCCTATGGACCCCCCCCCTTNNNNNNN
NNTGATGACATGTGAGGGGGNNCNNNAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGATGAAGTAAGCAGTACAAATAGGAG
TGAGGAATAAGCTGCATAGCTTGTCAGCAGCATTCGTTAAATAGTTGACA
TGGATATTGGGACTGACACTGTCCAACCAGGATCTGCTACTGTTGTTTCA
ATATTCCGGGCTTACTCTGAACTTCTGTTCTCCCAGCTGTATATTGAGGT
CTTGGTATGCTTCGTATAGCTGATGCCCTACCATTACTGATGCACTCTTG
TTTCACCTCCTGAGAACTCAGTTCATTAGGGTAAAGGAATTTTGGGGTTG
TCCCCAGGACTATACTATGTATGCTTTGCACAGCCAAGCTTGATAGGCCA
ACATTTTTTCCATATCTGTCTTTACTTCAGAAATTTATTTTCCTCTTTAA
GACTGGGGTTATAAGGATGCAAAAAATGAGAAAAATCACATTATCTCACA
AAGTTACAAAGACTAATATTTAAAAGGCTTGTACAGTATTTAGAGTAAAA
TCTGTTGCTAGAAAATGCACTTAAGCATTAGTTTACTTATATCCACCTTC
ATTCTTTTACTTATTGAAGTTTTTGTCAGATATTTAAATTTCAAACACTA
TCCAACACCCTCATTTTGATTTTTCTGCTGGGATTTAAGTAATTGTACCT
ACTGTGATAGCTTTTCTTGGTTGTCAACTTTAAACCCAAATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l24.g1 MSMg01no295_l24.g1 CHROMAT_FILE:
MSMg01no295_l24.g1 PHD_FILE: MSMg01no295_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:46 2005
         (293 letters)



>mm_chr1_143062731_143063423
          Length = 693

 Score =  536 bits (277), Expect = e-157
 Identities = 289/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgaagtaagcagtacaaataggagtgaggaataagctgcatagcttgtcagcagca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgaagtaagcggtacaaataggagtgaggaataagctgcatagcttgtcagcagca 260

                                                                       
Query: 61  ttcgttaaatagttgacatggatattgggactgacactgtccaaccaggatctgctactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgttaaatagttgacatggatattgggactgacactgtccaaccaggatctgctactg 320

                                                                       
Query: 121 ttgtttcaatattccgggcttactctgaacttctgttctcccagctgtatattgaggtct 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttcaatgttccgggcttactctgaacttctgttctcccagctgtatattgaggtct 380

                                                                       
Query: 181 tggtatgcttcgtatagctgatgccctaccattactgatgcactcttgtttcacctcctg 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtatgcttcgtatagctgataccctaccattactgatgcactcttgtttcacctcctg 440

                                                                
Query: 241 agaactcagttcattagggtaaaggaattttggggttgtccccaggactatac 293
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaactcacttcattagggtaaaggaattttggggttgtccccaggactatac 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)