BAC Information

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BAC

Clone NameMSMg01-295M08
Chromosome1 (Build37)
Map Location 32,026,062 - 32,209,990
singlet/doubletdoublet
Overlap geneLOC100041238
Upstream geneEG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M08.T7 (MSMg01no295_m08.b1)MSMg01-295M08.TJ (MSMg01no295_m08.g1)
ACCAG423571AG423572
length753755
length of high quality
(start - end)
234 (127 - 360)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no295_m08.b1 PHD_FILE: MSMg01no295_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005CHROMAT_FILE: MSMg01no295_m08.g1 PHD_FILE: MSMg01no295_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,209,757 - 32,209,990)(32,026,062 - 32,026,347)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACTCCCACACATGTGGTTTAGAGAAGTGAGCCACGTGGTCTCT
CCAATTGGAAGAAAACTATTCCCACACATGTAACTTGGAGGACTCAAATG
ATATTACTATATACTATGAGTGTTTGGGCCATGCACCTACTAAAGCATGT
AAAACATAGAATTTCTTAACATTAAGATATTTCTTGACAAGCCTCCACAC
TTTATTAATAATTTATGGTACCATCAAGAATGTATCATTTTCCTTCATAG
TATTCCACTCTTGCATCTTTGTTAATCTCATGTGTGACTGAAGTATACTT
TATAAATTATAGCTCNATCTGCCCCCCCCCACGCTATAAAATGATAAAAC
ATCTTGTTCACTGCCCTGCAAAGATAGAAACAAATCTCTCATTGTTATTC
AAATGATATTGATGGGGTTTCTCTGTGTTTTCATTCGCAGGTGCACTTTA
TAAATTAGAAGACATATTCCCCACATCAGGCAATACAAGAGCTTTTCCAG
TTGTTAAAGTTTTTTTTTAAGTTTAACATTGTATAATTTCTATAGGAAAA
TCCATATGAACATTAGTTAAATTACATCCAAAGTGAACATGTACATAAAG
CTAGCATTTATGTCAATAATCATAAGGAGCACCCTATTACTGATGGTTTT
TCATTTATTTATTAATGCTCTACTCTCCAACAATATCTATTATTAGACTT
ATA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCCCATTTTGTAACAGCCA
TGATGGTAGTTTACTGGGTTAAATGTTTCTGGAAACATTAGACTTTATTG
TTAATCTGTAATGGTCCAATAGAAGCATAGGGCTTAGAAAATAGTAACAA
ATACTACTCACTATTTAGTATAAAGAAGGCAAATGGAAAAGTGTGTGAGT
CAGCTGATTGTGCTCTCTCAAATTACTCTTTGACCCACAGAGCTAATGAA
GACAGTAGGTTTACCAGACTCCTCTTTGTGAAGGTCTAATGTCAAGTTGA
GATATTTTCTTCTGTATTTTGCCCACTCGCCCCGAACTCTTGAGTTCATT
CACAATACTTGTTTCTAGCCAACATAAAAAAAAAAAGCTTCTAGGGGGGG
GGCCTAGAAAATAATGATGGTCCAACTAATAATTGGGTGAAACAAATGTT
GAATCTATATAGCTAACGGATTTAAGAAGAAAAGAATACTTACTAGAACA
CAAGGTCTAGTTTTAAGAACTGGTGGGAATGTTGAGACTAAATTTTAAGG
TACAGTAAAATTCTAATTAAGACTCTTGTGATAGGGCATAAAGTGAATAA
ATTACAATACAGTATTTAATGAAAAAAGAGTATGTTTTCCTTACCTAATT
ACAAAGACCATTAAAAGTAACCCATAACTACGAATTCGATAGTTGACCCA
ATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m08.b1 MSMg01no295_m08.b1 CHROMAT_FILE:
MSMg01no295_m08.b1 PHD_FILE: MSMg01no295_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (234 letters)



>mm_chr1_32209557_32210190
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaacttggaggactcaaatgatattactatatactatgagtgtttgggccatgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 catgtaacttggaggactcaaatgatattactatatactatgagtgtttgggccatgcac 375

                                                                       
Query: 61  ctactaaagcatgtaaaacatagaatttcttaacattaagatatttcttgacaagcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctactaaagcatgtaaaacatagaatttcttaacattaagatatttcttgacaagcctcc 315

                                                                       
Query: 121 acactttattaataatttatggtaccatcaagaatgtatcattttccttcatagtattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acactttattaataatttatggtaccatcaagaatgtatcattttccttcatagtattcc 255

                                                                 
Query: 181 actcttgcatctttgttaatctcatgtgtgactgaagtatactttataaattat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 actcttgcatctttgttaatctcatgtgtgactgaagtatactttataaattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_m08.g1 MSMg01no295_m08.g1 CHROMAT_FILE:
MSMg01no295_m08.g1 PHD_FILE: MSMg01no295_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (286 letters)



>mm_chr1_32025862_32026547
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttcccattttgtaacagccatgatggtagtttactgggttaaatgtttctggaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttcccattttgtaacagccatgatggtagtttactgggttaaatgtttctggaaaca 260

                                                                       
Query: 61  ttagactttattgttaatctgtaatggtccaatagaagcatagggcttagaaaatagtaa 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtctttattgttaatctgtaatggtccaatagaagcatagggcttagaaaatagtaa 320

                                                                       
Query: 121 caaatactactcactatttagtataaagaaggcaaatggaaaagtgtgtgagtcagctga 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatactactcactgtttagtataaagaaggcaaatggaaaagtgtgtgagtcagctga 380

                                                                       
Query: 181 ttgtgctctctcaaattactctttgacccacagagctaatgaagacagtaggtttaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgctctctcaaattactctttgacccacagagctaatgaagacagtaggtttaccag 440

                                                         
Query: 241 actcctctttgtgaaggtctaatgtcaagttgagatattttcttct 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcctctttgtgaaggtctaatgtcaagttgagatattttcttct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)